[Home] | [Total List]

[180631_at]

Description F28B4.1 /REP_DB=WormBase Gene ID /WP=CE04455 /TR=Q19851 /GB=AAA83582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.2
(1.3)
A 		3.2
(-3)
A 		11.5
(3)
A 		7.5
(0.1)
A 		8
B 4.2
(-2.7)
A 		3.5
(-3)
A 		17.6
(2.5)
A 		19
(3)
A 		16
C 4.3
(-2.2)
A 		5.6
(-1.2)
A 		3.2
(-3)
A 		11.1
(3)
A 		8
avr 5.9
(-1.7) 		4.1
(-3) 		10.8
(1.8) 		12.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13
(0.9)
A 		2.8
(-3)
A 		4
(-2.5)
A 		18.3
(3)
A 		5.1
(-2.1)
A 		2.9
(-3)
A 		16
B 11.4
(3)
A 		4.6
(-1.3)
A 		2.7
(-2.4)
A 		4.7
(-1.2)
A 		6.7
(0.1)
A 		1.8
(-3)
A 		10
C 5.3
(-1.6)
A 		3
(-2.7)
A 		15.1
(3)
A 		3.4
(-2.5)
A 		13.9
(2.4)
A 		2.4
(-3)
A 		13
avr 9.9
(3) 		3.5
(-2.1) 		7.3
(0.9) 		8.8
(2.1) 		8.6
(2) 		2.4
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.3
(3)
A 		0.7
(-3)
A 		3
(2.3)
A 		1.1
(-2.1)
A 		3
B 1.3
(-2.3)
A 		0.9
(-3)
A 		4.1
(3)
A 		4
(2.8)
A 		3
C 1.4
(-0.8)
A 		1.6
(0.8)
A 		1.1
(-3)
A 		1.9
(3)
A 		1
avr 2
(0.4) 		1.1
(-3) 		2.7
(3) 		2.3
(1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.4
(-0.4)
A 		1
(-2.5)
A 		0.9
(-2.7)
A 		4.6
(3)
A 		1.5
(-1.8)
A 		0.7
(-3)
A 		4
B 4
(3)
A 		1.5
(-1.4)
A 		0.6
(-3)
A 		1.3
(-1.8)
A 		2.7
(0.7)
A 		0.7
(-2.8)
A 		3
C 1.9
(-1.1)
A 		0.9
(-2.7)
A 		3.8
(1.9)
A 		0.7
(-3)
A 		4.5
(3)
A 		0.8
(-2.8)
A 		4
avr 2.8
(2.7) 		1.1
(-1.9) 		1.8
(0) 		2.2
(1.1) 		2.9
(3) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18273
Sequence Type Exemplar sequence
Representative Public ID F28B4.1 NCBI
Target Description F28B4.1 /REP_DB=WormBase Gene ID /WP=CE04455 /TR=Q19851 /GB=AAA83582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076147(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076147 NCBI Caenorhabditis elegans F28B4.1 (F28B4.1) mRNA, complete cds. 10/11 None
F28B4.1 ENSEMBL cdna:known chromosome:CEL140:X:3205069:3206160:1 gene:F28B4.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013194 7/11 Cross Hyb Matching Probes None
SNAP00000013186 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3205069-3206187(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B4.1
Entrez Gene 185045 Entrez gene
SwissProt Q19851 EMBL-EBI
WormBase CE35510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83582 Hypothetical protein F28B4.1 [Caenorhabditis elegans] ref|NP_508548.2| F28B4.1 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508548.2 2 7-22,32-54
F28B4.1 2 7-22,32-54
Sequence
Target Sequence 
>C. ELEGANS:180631_AT
tatatttggttcgtcgcgttcgtttggctctatctgtatgaggaatttgattggaagcaa
gaagaaattgtagattttcacaaatacgtcgtttctcccttgttcctcgttaccttgtta
ctgtcttttttgtcacgagtaacattgccacgtctgaaatatacttctagtgaacgaatg
gttcgcaaggcttactggacacttttcctcatcctttatttaatcatgggcttgcaaacg
gataagtggattacgttatcctcgaatgcacgtttcaatgcacttatcagacaaatcaga
gaggctccgtctggtgaccatgtctcatttttaaaagaagatataatagaatatttggag
aggaatgtgtcagtcggaaacatttcttttgtctcgtgtgatggcggaccactcatcaga
aacgacaacgatcagctcaccgacagacacggactcgttgccgaagccaggaacgctgaa
tggaacgtccgggttgcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTTGGTTCGTCGCGTTCGTTT 618 661 40 Antisense
TCACAAATACGTCGTTTCTCCCTTG 636 627 117 Antisense
CCTTGTTACTGTCTTTTTTGTCACG 557 267 152 Antisense
GTCACGAGTAACATTGCCACGTCTG 357 465 171 Antisense
GGTTCGCAAGGCTTACTGGACACTT 600 507 219 Antisense
CTTTTCCTCATCCTTTATTTAATCA 90 223 241 Antisense
ATCAGAGAGGCTCCGTCTGGTGACC 336 27 334 Antisense
TTGTCTCGTGTGATGGCGGACCACT 669 673 428 Antisense
AGAAACGACAACGATCAGCTCACCG 60 73 457 Antisense
CGACAGACACGGACTCGTTGCCGAA 64 253 480 Antisense
TGAATGGAACGTCCGGGTTGCGCTG 560 573 516 Antisense
Sequence Source Affymetrix Proprietary Database