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[180630_at]

Description K05G3.1 /REP_DB=WormBase Gene ID /WP=CE04753 /TR=Q21251 /GB=AAB52496.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.5
(-3)
A 		18
(3)
A 		10.8
(0)
A 		11.1
(0.1)
A 		15
B 34.5
(3)
A 		13.9
(-1.6)
A 		7.8
(-3)
A 		10.6
(-2.4)
A 		27
C 17.9
(-2.1)
A 		6.4
(-3)
A 		22
(-1.8)
A 		81.4
(3)
A 		75
avr 18.6
(-1.4) 		12.8
(-3) 		13.5
(-2.8) 		34.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.6
(-2.8)
A 		5.5
(-3)
A 		47.9
(3)
A 		10
(-2.4)
A 		8.1
(-2.6)
A 		7.3
(-2.7)
A 		42
B 7.5
(-2.5)
A 		8.2
(-2.3)
A 		9.7
(-2)
A 		8.3
(-2.3)
A 		5.5
(-3)
A 		30.1
(3)
A 		25
C 7.8
(-2.4)
A 		3.7
(-3)
A 		12.2
(-1.7)
A 		9.1
(-2.2)
A 		42.3
(3)
A 		4.6
(-2.9)
A 		39
avr 7.3
(-2.5) 		5.8
(-3) 		23.3
(3) 		9.1
(-1.9) 		18.6
(1.4) 		14
(-0.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-3)
A 		3.9
(3)
A 		2.8
(0.5)
A 		1.6
(-2.3)
A 		3
B 11
(3)
A 		3.4
(-2)
A 		1.8
(-3)
A 		2.3
(-2.7)
A 		9
C 5.9
(-1)
A 		1.9
(-3)
A 		7.7
(-0.1)
A 		13.7
(3)
A 		12
avr 6.1
(3) 		3.1
(-3) 		4.1
(-1) 		5.9
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2
(-2.5)
A 		10.4
(3)
A 		2.5
(-2.2)
A 		2.4
(-2.2)
A 		1.8
(-2.6)
A 		9
B 2.6
(-2.7)
A 		2.7
(-2.7)
A 		2.4
(-2.9)
A 		2.2
(-3)
A 		2.3
(-2.9)
A 		11.2
(3)
A 		9
C 2.9
(-2.1)
A 		1.1
(-3)
A 		3.1
(-2)
A 		1.8
(-2.7)
A 		13.7
(3)
A 		1.6
(-2.8)
A 		13
avr 2.2
(-2.6) 		1.9
(-3) 		5.3
(1.9) 		2.2
(-2.6) 		6.1
(3) 		4.9
(1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17331
Sequence Type Exemplar sequence
Representative Public ID K05G3.1 NCBI
Target Description K05G3.1 /REP_DB=WormBase Gene ID /WP=CE04753 /TR=Q21251 /GB=AAB52496.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078275 NCBI Caenorhabditis elegans K05G3.1 (K05G3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038239 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16499425:16501678:1 10/11 None
SNAP00000038238 ENSEMBL cdna:SNAP chromosome:CEL140:X:16501116:16501856:1 11/11 None
K05G3.1 ENSEMBL cdna:known chromosome:CEL140:X:16501245:16501856:1 gene:K05G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16501244-16501856(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05G3.1
Entrez Gene 187040 Entrez gene
SwissProt Q21251 EMBL-EBI
WormBase CE04753 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8408 3'-5' exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52496 Hypothetical protein K05G3.1 [Caenorhabditis elegans] ref|NP_510676.1| K05G3.1 [Caenorhabditis elegans] 1.0E-112
blast AAB52496 Hypothetical protein K05G3.1 [Caenorhabditis elegans] ref|NP_510676.1| K05G3.1 [Caenorhabditis elegans] 8.0E-77
blast CAB02702 Hypothetical protein W05H12.2 [Caenorhabditis elegans] emb|CAB04921.1| Hypothetical protein W05H12.2 [Caenorhabditis elegans] ref|NP_493360.1| W05H12.2 [Caenorhabditis elegans] 7.0E-18
blast CAB02702 Hypothetical protein W05H12.2 [Caenorhabditis elegans] emb|CAB04921.1| Hypothetical protein W05H12.2 [Caenorhabditis elegans] ref|NP_493360.1| W05H12.2 [Caenorhabditis elegans] 2.0E-15
blast CAE65327 Hypothetical protein CBG10261 [Caenorhabditis briggsae] 1.0E-14
blast CAE65327 Hypothetical protein CBG10261 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180630_AT
agcaagtctctcaaggtgtcaacgagagacggacctctatcatggagcgaattgttgagg
aaacggaggatttcaacaagcccgccgagttcgaaaacttgaccatcaccgttactgaag
ataaagaaaaagcaaaaagagtattggagaaatttgaaaagcacccaacagtgccaattt
attttgacagtgagcattcgtacatccgtctaaaaaacgacacgaaagttgctgcaattc
aactgtatgactcttgcacgaggcacgtgttggtttggcgactccacaacgctgaccacg
agtacctgaaaggcgttcgagaacaacttgaattactgtcaaaggctcgaatgtttgcaa
cgttcggaaaagaggagtttcttgagaacgcaatcaagtatgttacaaaggatttgcaag
ttaatcaaaagtcgttagaagctttgcttctcaaaaaggaaattgtaattacgaagtggg
aaaccttctcagactggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGTCTCTCAAGGTGTCAACGA 66 77 50 Antisense
GAGACGGACCTCTATCATGGAGCGA 319 393 75 Antisense
CGGAGGATTTCAACAAGCCCGCCGA 61 243 113 Antisense
CAAGCCCGCCGAGTTCGAAAACTTG 286 181 126 Antisense
AAAACTTGACCATCACCGTTACTGA 675 127 143 Antisense
ACAGTGAGCATTCGTACATCCGTCT 545 107 236 Antisense
TGTATGACTCTTGCACGAGGCACGT 431 559 293 Antisense
GAGGCACGTGTTGGTTTGGCGACTC 619 405 309 Antisense
CGCTGACCACGAGTACCTGAAAGGC 619 255 339 Antisense
AAAGGCTCGAATGTTTGCAACGTTC 24 73 390 Antisense
AGTGGGAAACCTTCTCAGACTGGAC 598 59 524 Antisense
Sequence Source Affymetrix Proprietary Database