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[180627_at]

Description K04F1.9 /REP_DB=WormBase Gene ID /WP=CE19960 /TR=Q9TXL3 /GB=AAC78168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 80      6grp_total > 36      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1727
1 2 3 4 range
A 195.8
(-2.9)
P 		181.2
(-3)
P 		200.8
(-2.9)
P 		1535.1
(3)
P 		1354
B 232.3
(-2.7)
P 		157.4
(-3)
P 		232.7
(-2.7)
P 		1822.9
(3)
P 		1666
C 290.7
(-2.4)
P 		126.7
(-3)
P 		196.8
(-2.8)
P 		1853.2
(3)
P 		1727
avr 239.6
(-2.7) 		155.1
(-3) 		210.1
(-2.8) 		1737.1
(3) 		1582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 239.2
(0.9)
P 		286.2
(3)
P 		257.9
(1.8)
P 		178.5
(-1.7)
P 		149.3
(-3)
P 		197.6
(-0.9)
P 		137
B 267.2
(2.2)
P 		287.2
(3)
P 		237.5
(1.1)
P 		133.7
(-3)
P 		196.6
(-0.5)
P 		264.5
(2.1)
P 		154
C 341.2
(3)
P 		254.3
(0.5)
P 		128.9
(-3)
P 		130.3
(-3)
P 		167.8
(-1.9)
P 		270.3
(1)
P 		212
avr 282.5
(3) 		275.9
(2.7) 		208.1
(-0.3) 		147.5
(-3) 		171.2
(-1.9) 		244.1
(1.3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 71.3
(-2)
P 		39.3
(-3)
P 		52.5
(-2.6)
P 		224.7
(3)
P 		185
B 74.1
(-2.4)
P 		38.9
(-3)
P 		53.9
(-2.7)
P 		388.5
(3)
P 		350
C 96.2
(-1.7)
P 		36.4
(-3)
P 		68.6
(-2.3)
P 		312.5
(3)
P 		276
avr 80.5
(-2.1) 		38.2
(-3) 		58.3
(-2.6) 		308.6
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 44.1
(-3)
P 		101.8
(3)
P 		56.2
(-1.7)
P 		45.3
(-2.9)
P 		45.1
(-2.9)
P 		48.1
(-2.6)
P 		58
B 93
(2.5)
P 		95.6
(2.7)
P 		57.7
(-0.9)
P 		35.4
(-3)
P 		79.9
(1.2)
P 		98.6
(3)
P 		63
C 126.5
(3)
P 		77.6
(0.1)
P 		32.8
(-2.6)
P 		26.2
(-3)
P 		54.3
(-1.3)
P 		90.5
(0.8)
P 		100
avr 87.9
(2.6) 		91.7
(3) 		48.9
(-1.6) 		35.6
(-3) 		59.8
(-0.4) 		79.1
(1.7) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14967
Sequence Type Exemplar sequence
Representative Public ID K04F1.9 NCBI
Target Description K04F1.9 /REP_DB=WormBase Gene ID /WP=CE19960 /TR=Q9TXL3 /GB=AAC78168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071073 NCBI Caenorhabditis elegans K04F1.9 (K04F1.9) mRNA, complete cds. 11/11 None
K04F1.9 ENSEMBL cdna:known chromosome:CEL140:V:1665082:1665677:1 gene:K04F1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011970 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1665081-1665677(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.9
Entrez Gene 186995 Entrez gene
SwissProt Q9TXL3 EMBL-EBI
WormBase CE19960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78168 Hypothetical protein K04F1.9 [Caenorhabditis elegans] ref|NP_503474.1| K04F1.9 [Caenorhabditis elegans] 3.0E-57
blast NP_490777 Y18H1A.8 [Caenorhabditis elegans] gb|AAK21511.2| Hypothetical protein Y18H1A.8 [Caenorhabditis elegans] 1.0E-11
blast AAC78167 Hypothetical protein K04F1.8 [Caenorhabditis elegans] ref|NP_503475.1| K04F1.8 [Caenorhabditis elegans] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:180627_AT
gacatcttggaccttcaatttttcaactttcgcatttttactaattctacctattacgga
aggaactactaaattcgaattccatgggcaattattctgcgaaaaagataatttcaatta
tcaaataactatttacgaagatgacatctacattgacgataaaatctctcacctaccatc
cgttttgtcttcatcaccacacttatattcagccactgcaattgacaattgggatggttt
ttggaataatttttacgacctctacatgattgtcacacacaattgtacatcgaacggcaa
aaacaaaattcttacagttagccttgggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTTGGACCTTCAATTTTTCA 87 371 15 Antisense
TTTCAACTTTCGCATTTTTACTAAT 413 669 35 Antisense
AATTCCATGGGCAATTATTCTGCGA 152 179 92 Antisense
ACGATAAAATCTCTCACCTACCATC 355 93 170 Antisense
TTTTGTCTTCATCACCACACTTATA 703 677 197 Antisense
ATCACCACACTTATATTCAGCCACT 343 29 207 Antisense
ATTCAGCCACTGCAATTGACAATTG 474 11 221 Antisense
GGAATAATTTTTACGACCTCTACAT 507 531 257 Antisense
GACCTCTACATGATTGTCACACACA 284 383 271 Antisense
ACACACAATTGTACATCGAACGGCA 401 111 289 Antisense
AATTCTTACAGTTAGCCTTGGGCAA 129 177 321 Antisense
Sequence Source Affymetrix Proprietary Database