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[180626_at]

Description F02E8.4 /REP_DB=WormBase Gene ID /WP=CE07019 /TR=Q19122 /GB=AAA96206.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 9.9
(-3)
A 		10
(-2.9)
A 		12.4
(-1.6)
A 		20.4
(3)
A 		11
B 10
(0.2)
A 		4.8
(-3)
A 		9.5
(-0.1)
A 		14.5
(3)
A 		10
C 3
(-3)
A 		11.7
(-2.1)
A 		7.8
(-2.5)
A 		60.7
(3)
A 		58
avr 7.6
(-3) 		8.8
(-2.7) 		9.9
(-2.4) 		31.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 22.9
(-2.6)
A 		5.5
(-2.9)
A 		2.1
(-3)
A 		8.9
(-2.9)
A 		137.2
(-0.6)
A 		344.6
(3)
P 		343
B 5.9
(-3)
A 		7.2
(-3)
A 		7.6
(-3)
A 		13.3
(-2.9)
A 		105.4
(-1.1)
A 		314.3
(3)
P 		308
C 8.1
(-3)
A 		9.6
(-2.9)
A 		13.2
(-2.9)
A 		5.5
(-3)
A 		107.3
(-1.2)
A 		341.7
(3)
P 		336
avr 12.3
(-2.9) 		7.4
(-3) 		7.6
(-3) 		9.2
(-3) 		116.6
(-1) 		333.5
(3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.6
(3)
A 		2.2
(-3)
A 		3.2
(1.3)
A 		3
(0.4)
A 		1
B 3.2
(3)
A 		1.2
(-3)
A 		2.2
(0)
A 		3.1
(2.7)
A 		2
C 1
(-3)
A 		3.4
(-1.4)
A 		2.7
(-1.9)
A 		10.2
(3)
A 		9
avr 2.6
(-2.4) 		2.3
(-3) 		2.7
(-2.2) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		2
(-2.9)
A 		0.5
(-3)
A 		2.2
(-2.9)
A 		41.4
(-0.1)
A 		83.9
(3)
P 		83
B 2.1
(-3)
A 		2.4
(-3)
A 		1.8
(-3)
A 		3.5
(-2.9)
A 		42.8
(-0.9)
A 		117.2
(3)
P 		115
C 3
(-2.9)
A 		2.9
(-2.9)
A 		3.4
(-2.9)
A 		1.1
(-3)
A 		34.7
(-1.2)
A 		114.4
(3)
P 		113
avr 3.1
(-2.9) 		2.4
(-3) 		1.9
(-3) 		2.3
(-3) 		39.6
(-0.8) 		105.2
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17154
Sequence Type Exemplar sequence
Representative Public ID F02E8.4 NCBI
Target Description F02E8.4 /REP_DB=WormBase Gene ID /WP=CE07019 /TR=Q19122 /GB=AAA96206.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076365 NCBI Caenorhabditis elegans F02E8.4 (F02E8.4) mRNA, complete cds. 11/11 None
SNAP00000018046 ENSEMBL cdna:SNAP chromosome:CEL140:X:4454101:4456932:1 11/11 None
GENEFINDER00000018053 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4454101:4456932:1 11/11 None
F02E8.4 ENSEMBL cdna:known chromosome:CEL140:X:4454203:4456932:1 gene:F02E8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4454203-4456933(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02E8.4
Entrez Gene 184092 Entrez gene
SwissProt Q19122 EMBL-EBI
WormBase CE07019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96206 Hypothetical protein F02E8.4 [Caenorhabditis elegans] ref|NP_508766.1| F02E8.4 [Caenorhabditis elegans] 0.0
blast CAA92004 Hypothetical protein R09A8.2 [Caenorhabditis elegans] ref|NP_510108.2| R09A8.2 [Caenorhabditis elegans] 2.0E-43
blast CAA92004 Hypothetical protein R09A8.2 [Caenorhabditis elegans] ref|NP_510108.2| R09A8.2 [Caenorhabditis elegans] 1.0E-42
blast CAA92003 Hypothetical protein R09A8.1 [Caenorhabditis elegans] ref|NP_510107.1| R09A8.1 [Caenorhabditis elegans] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:180626_AT
aaacgggtccattgattcctgatctagacatgctgttcggaaaacgacgttcaacatcaa
ttgatacaacaggcagcacgagttctcgcacggacctgcatagtctgaatgactctggtt
ttgaagaaaacgcagcccaacttcgagaaagcgttgactctacggatcataaatcaagta
cactgaagcaaaatcagacagaaagctcattttctatgaacagtgcagagcttggaattc
gatccaagaaagctaatgtatcgagaatgagttcttctatttcggaagattttggtgttt
catggaaccgtattccagtacgaaaggtttatacagtttacgcgcccactcagaagaaac
ttgtgaattctcgtgcattcgataggctcaatggaccatcagggtctggtgttcaactcc
aagatcaaagcacgaggagagagaatgctcccgtcggtacttctggtggagatttacgga
attcatccaaaaatctgccattgacttcttttcgaagaagccctcccaaacggaataaca
ttgattcttatgaaacttcatctcgcgatgcaccatctggatctggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGGGTCCATTGATTCCTGATCT 74 127 1370 Antisense
GATTCCTGATCTAGACATGCTGTTC 665 431 1383 Antisense
AACAGGCAGCACGAGTTCTCGCACG 332 137 1437 Antisense
CTCGCACGGACCTGCATAGTCTGAA 529 233 1454 Antisense
GAATTCTCGTGCATTCGATAGGCTC 203 325 1734 Antisense
GGGTCTGGTGTTCAACTCCAAGATC 541 497 1771 Antisense
TCCCGTCGGTACTTCTGGTGGAGAT 575 591 1818 Antisense
AATCTGCCATTGACTTCTTTTCGAA 405 169 1861 Antisense
GAAGCCCTCCCAAACGGAATAACAT 293 329 1886 Antisense
TGAAACTTCATCTCGCGATGCACCA 400 573 1920 Antisense
GCGATGCACCATCTGGATCTGGAGT 146 291 1934 Antisense
Sequence Source Affymetrix Proprietary Database