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[180623_at]

Description K12D9.6 /REP_DB=WormBase Gene ID /WP=CE12190 /TR=P91381 /GB=AAG24163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 03      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 36.2
(-2.4)
A 		31.6
(-3)
A 		53.4
(-0.3)
A 		80.3
(3)
A 		49
B 28.1
(1.6)
A 		35.4
(3)
A 		4.5
(-3)
A 		20.1
(0)
A 		31
C 39.2
(-1.6)
A 		20
(-2.4)
A 		7
(-3)
A 		140.8
(3)
P 		134
avr 34.5
(-1.7) 		29
(-2.2) 		21.6
(-3) 		80.4
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 6.7
(-2.6)
A 		5
(-2.8)
A 		51.1
(3)
A 		3.7
(-3)
A 		7.4
(-2.5)
A 		3.6
(-3)
A 		48
B 6.1
(-2.4)
A 		9.3
(-1.7)
A 		31.5
(3)
A 		6.2
(-2.4)
A 		14.6
(-0.6)
A 		3.4
(-3)
A 		28
C 11.9
(-1.2)
A 		29.4
(2.4)
A 		5.9
(-2.4)
A 		32.4
(3)
A 		31.4
(2.8)
A 		3.2
(-3)
A 		29
avr 8.2
(-1.9) 		14.6
(-0.4) 		29.5
(3) 		14.1
(-0.5) 		17.8
(0.3) 		3.4
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.2
(2.4)
A 		6.8
(-3)
A 		13.9
(3)
A 		11.8
(1.2)
A 		7
B 9
(3)
A 		8.8
(2.9)
A 		1
(-3)
A 		4.3
(-0.5)
A 		8
C 13
(-0)
A 		5.7
(-2.1)
A 		2.4
(-3)
A 		23.7
(3)
P 		21
avr 11.7
(1.7) 		7.1
(-2) 		5.8
(-3) 		13.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		1.8
(-2.5)
A 		11.1
(3)
A 		0.9
(-3)
A 		2.2
(-2.2)
A 		0.9
(-3)
A 		10
B 2.1
(-2.2)
A 		3.1
(-1.3)
A 		7.6
(3)
A 		1.6
(-2.7)
A 		5.9
(1.4)
A 		1.3
(-3)
A 		6
C 4.4
(-0.8)
A 		9
(2.2)
A 		1.5
(-2.7)
A 		6.5
(0.6)
A 		10.2
(3)
A 		1.1
(-3)
A 		9
avr 2.6
(-1.4) 		4.6
(0.8) 		6.7
(3) 		3
(-1) 		6.1
(2.4) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14810
Sequence Type Exemplar sequence
Representative Public ID K12D9.6 NCBI
Target Description K12D9.6 /REP_DB=WormBase Gene ID /WP=CE12190 /TR=P91381 /GB=AAG24163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2994726:3007950:-1 11/11 None
K12D9.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2996919:2997744:-1 gene:K12D9.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2996810-2997612(-) 94.84 100.0
Public Domain and Genome References
Ensembl K12D9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 0.0
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-172
blast T25822 hypothetical protein K12D9.8 - Caenorhabditis elegans 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022490 27 36-58,65-84,89-107,134-156,176-198,271-293,298-320,332-349,364-386,399-421,431-448,472-494,509-531,710-727,775-797,823-845,860-882,922-944,954-976,983-1005,1015-1032,1045-1067,1110-1132,1318-1335,1383-1405,1429-1451,1466-1488
Sequence
Target Sequence 
>C. ELEGANS:180623_AT
aatggctgcagttgctctattcgatatcttatcctctttagtacacattgaaattttttt
tgagcgacatagcaatttaatttttacatgttttccgacagacgcttacggtctagttct
agctaaagccttgctcattgtgataaatgattactcgagaagatgctcaacatggcttat
cgtattcattgctttaattcgtacactgataattcggaatccattcagcccaaagcacgt
attgctgaaaaagccaaggtcatcgtttatggtgatcgctggaatttctgcagcaagtct
gccaatttcgatatttaaattcctggaattcgagttcatagagaaaatgagcaaacgttc
ttgtgctccaaaaggttcctattattttatagctttatcagaactattctcgagaaacga
tggttgtttagcaaaacatttcaatttattcaattcatttgtgtcagatataattccatg
tattctacttccaatatttacttgttcacttgttatggtttttttgaaaagaaaaaagga
catagaaagaatgccatctttcgtcagcagcctattaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTGCAGTTGCTCTATTCGAT 179 163 147 Antisense
GATATCTTATCCTCTTTAGTACACA 230 423 169 Antisense
TACATGTTTTCCGACAGACGCTTAC 14 645 231 Antisense
GACGCTTACGGTCTAGTTCTAGCTA 52 373 247 Antisense
GTTCTAGCTAAAGCCTTGCTCATTG 311 443 262 Antisense
ACATGGCTTATCGTATTCATTGCTT 598 107 316 Antisense
AATCCATTCAGCCCAAAGCACGTAT 373 167 364 Antisense
GGTCATCGTTTATGGTGATCGCTGG 700 503 404 Antisense
CAGCAAGTCTGCCAATTTCGATATT 296 205 437 Antisense
AGCAAACGTTCTTGTGCTCCAAAAG 470 75 496 Antisense
CATCTTTCGTCAGCAGCCTATTAAT 173 213 701 Antisense
Sequence Source Affymetrix Proprietary Database