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[180621_at]

Description C01B7.2 /REP_DB=WormBase Gene ID /WP=CE06726 /TR=Q17547 /GB=AAA96113.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 14.4
(-3)
A 		14
(-3)
A 		43.7
(-0.7)
A 		92.9
(3)
A 		79
B 26.8
(-1.9)
A 		86.8
(3)
A 		13.6
(-3)
A 		24.6
(-2.1)
A 		73
C 75.8
(2.8)
A 		77.6
(3)
A 		22.7
(-3)
A 		60.2
(1.1)
A 		55
avr 39
(-0.8) 		59.5
(3) 		26.7
(-3) 		59.2
(2.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 72.5
(3)
A 		57.1
(1.3)
A 		17.4
(-3)
A 		31.2
(-1.5)
A 		37
(-0.9)
A 		49.7
(0.5)
A 		55
B 75.8
(3)
A 		68.7
(2.4)
A 		50.7
(0.7)
A 		9.6
(-3)
A 		28.4
(-1.3)
A 		36.9
(-0.5)
A 		66
C 32.9
(-1.5)
A 		37.6
(-1.1)
A 		38.8
(-1)
A 		88.8
(3)
A 		13.9
(-3)
A 		34.7
(-1.3)
A 		75
avr 60.4
(3) 		54.5
(2) 		35.6
(-1.4) 		43.2
(-0) 		26.4
(-3) 		40.4
(-0.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 5.2
(-1.8)
A 		3
(-3)
A 		11.4
(1.8)
A 		13.6
(3)
A 		11
B 8.6
(-1.2)
A 		21.4
(3)
A 		3.2
(-3)
A 		5.3
(-2.3)
A 		18
C 25.1
(3)
A 		22.3
(2)
A 		7.9
(-3)
A 		10.1
(-2.2)
A 		17
avr 13
(1.1) 		15.6
(3) 		7.5
(-3) 		9.7
(-1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.4
(0.5)
A 		20.3
(3)
A 		3.8
(-3)
A 		7.9
(-1.5)
A 		11.2
(-0.3)
A 		12.1
(0)
A 		17
B 26.4
(3)
A 		22.9
(2.1)
A 		12.3
(-0.5)
A 		2.5
(-3)
A 		11.5
(-0.7)
A 		13.8
(-0.2)
A 		24
C 12.2
(0.4)
A 		11.5
(0.1)
A 		9.9
(-0.6)
A 		17.9
(3)
A 		4.5
(-3)
A 		11.6
(0.2)
A 		13
avr 17.3
(2.4) 		18.2
(3) 		8.7
(-3) 		9.4
(-2.6) 		9.1
(-2.7) 		12.5
(-0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11435
Sequence Type Exemplar sequence
Representative Public ID C01B7.2 NCBI
Target Description C01B7.2 /REP_DB=WormBase Gene ID /WP=CE06726 /TR=Q17547 /GB=AAA96113.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171494, NM_171493
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171493 NCBI Caenorhabditis elegans C01B7.1a (C01B7.1) mRNA, complete cds. A 
C01B7.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:8789138:8795358:1 gene:C01B7.1 A 
SNAP00000041465 ENSEMBL cdna:SNAP chromosome:CEL140:V:8789435:8792234:1 None
C01B7.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:8789165:8795358:1 gene:C01B7.1 A 
C01B7.1b ENSEMBL cdna:known chromosome:CEL140:V:8789435:8792234:1 gene:C01B7.1 None
NM_171494 NCBI Caenorhabditis elegans C01B7.1b (C01B7.1) mRNA, complete cds. None
GENEFINDER00000041471 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8787502:8794951:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8788461-8789515(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96114 Hypothetical protein C01B7.1a [Caenorhabditis elegans] ref|NP_741578.1| C01B7.1a [Caenorhabditis elegans] 0.0
blast CAE57749 Hypothetical protein CBG00762 [Caenorhabditis briggsae] 0.0
blast AAM29659 Hypothetical protein C01B7.1b [Caenorhabditis elegans] ref|NP_741579.1| C01B7.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180621_AT
gacggctgctgccaacagacgcagccatctcttcgagtcagagcgtcagatgtctcctcc
ggtttctttctcttcttcttattttcttcatcccgaagtgtatcggcgtgccgtttcgca
attttgccggctcataaaacctcgtcaaccggggcgacgccactttctttcctcgtcacc
tcctcttctccgtcatcatcaccccgttatcaatttcttcttcttcttcttcctgacgct
ttgtacgagcattctttcattcatcttctcctcttccgaattctctcattttctcatttt
tctttcagcgtacctacacttctcatcgttgctttccttctccacgagactcgtcgtgtg
atcgtcaacaccagatcacctgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCTGCTGCCAACAGACGCAGC 688 373 67 Antisense
CAGCCATCTCTTCGAGTCAGAGCGT 485 203 88 Antisense
GAGTCAGAGCGTCAGATGTCTCCTC 606 399 101 Antisense
TATTTTCTTCATCCCGAAGTGTATC 655 661 146 Antisense
GAAGTGTATCGGCGTGCCGTTTCGC 647 335 161 Antisense
GCCGTTTCGCAATTTTGCCGGCTCA 415 283 176 Antisense
TCATAAAACCTCGTCAACCGGGGCG 295 611 198 Antisense
CTTCTTCCTGACGCTTTGTACGAGC 578 221 292 Antisense
GTACGAGCATTCTTTCATTCATCTT 373 459 309 Antisense
GAGACTCGTCGTGTGATCGTCAACA 210 393 412 Antisense
ATCGTCAACACCAGATCACCTGATG 597 35 427 Antisense
Sequence Source Affymetrix Proprietary Database