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[180620_at]

Description F48A9.2 /REP_DB=WormBase Gene ID /WP=CE10718 /TR=O01567 /GB=AAB93342.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 186.9
(3)
A 		139.6
(-3)
A 		149.3
(-1.8)
A 		172.9
(1.2)
A 		47
B 202.1
(3)
A 		171.8
(0.7)
A 		159.6
(-0.3)
A 		124.6
(-3)
A 		78
C 195.6
(1.8)
A 		113.2
(-2.8)
A 		109.8
(-3)
A 		217.1
(3)
A 		107
avr 194.9
(3) 		141.5
(-2.8) 		139.6
(-3) 		171.5
(0.5) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 233.8
(3)
A 		144.1
(0.2)
A 		129.8
(-0.3)
A 		117.2
(-0.7)
A 		119.5
(-0.6)
A 		44.6
(-3)
A 		189
B 219.7
(3)
A 		108.3
(-2.2)
A 		152.5
(-0.2)
A 		92.1
(-3)
A 		108.9
(-2.2)
A 		96.6
(-2.8)
A 		128
C 152.5
(2.5)
A 		160.4
(3)
A 		149.7
(2.4)
A 		138.4
(1.7)
A 		56.5
(-3)
A 		81.8
(-1.5)
A 		104
avr 202
(3) 		137.6
(-0) 		144
(0.3) 		115.9
(-1) 		95
(-2) 		74.3
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 68
(3)
A 		30.3
(-2.3)
A 		39
(-1.1)
A 		25.3
(-3)
A 		43
B 64.5
(3)
A 		42.4
(-0.5)
A 		37
(-1.4)
A 		26.6
(-3)
A 		38
C 64.8
(3)
A 		32.5
(-3)
A 		38.3
(-1.9)
A 		36.6
(-2.2)
A 		32
avr 65.8
(3) 		35.1
(-2.1) 		38.1
(-1.6) 		29.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 43.1
(1.8)
A 		51.3
(3)
A 		28.3
(-0.4)
A 		29.7
(-0.2)
A 		36.1
(0.7)
A 		10.9
(-3)
A 		40
B 76.4
(3)
A 		36
(-1.7)
A 		37
(-1.5)
A 		24.4
(-3)
A 		44.2
(-0.7)
A 		36
(-1.7)
A 		52
C 56.5
(3)
A 		48.9
(1.8)
A 		38.1
(0.1)
A 		27.8
(-1.5)
A 		18.3
(-3)
A 		27.4
(-1.6)
A 		38
avr 58.7
(3) 		45.4
(0.6) 		34.5
(-1.3) 		27.3
(-2.6) 		32.9
(-1.6) 		24.8
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1859
Sequence Type Exemplar sequence
Representative Public ID F48A9.2 NCBI
Target Description F48A9.2 /REP_DB=WormBase Gene ID /WP=CE10718 /TR=O01567 /GB=AAB93342.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059498 NCBI Caenorhabditis elegans F48A9.2 (F48A9.2) mRNA, complete cds. 11/11 None
F48A9.2 ENSEMBL cdna:known chromosome:CEL140:I:6600466:6601965:1 gene:F48A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6600394-6601894(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48A9.2
Entrez Gene 185958 Entrez gene
SwissProt O01567 EMBL-EBI
WormBase CE10718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93342 Hypothetical protein F48A9.2 [Caenorhabditis elegans] ref|NP_491899.1| F48A9.2 [Caenorhabditis elegans] 1.0E-106
blast CAE67213 Hypothetical protein CBG12649 [Caenorhabditis briggsae] 3.0E-49
Sequence
Target Sequence 
>C. ELEGANS:180620_AT
tttcttcaccatccatgcgtggttcccatggatacccaccttcacgtggcaactacgata
cctacagtagtccatcaggtggacatggacaaatggtaatcaatatgaagactacagtaa
ctacaagtggtggacaacataatggattggtggtacatagtgcaattcagtcagcaagtc
cgagtactagtcagagttcatggatgtcaccgtactcagaatctccttctcgaagacttg
aagatagccttgatatgatgagatcaaatacttcacttcataggtcatctcctcttccaa
ttcaaatggtacccagcacatctcgtgaaacattaatatcagttggaagagaaggatcat
ctcgaagagaaaatgggtatattggaacacctccaaaacctccatcaccgcctccgtcgc
ccatttattcatttaaaggtcgtgactcacctccagacgagttcattcaaccaacaaagc
ttgttttaaacgtcttccgaccgcagcgtaaactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCACCATCCATGCGTGGTTC 30 667 128 Antisense
ATGCGTGGTTCCCATGGATACCCAC 594 39 142 Antisense
CCCACCTTCACGTGGCAACTACGAT 360 257 162 Antisense
GCAATTCAGTCAGCAAGTCCGAGTA 87 321 289 Antisense
GTTCATGGATGTCACCGTACTCAGA 339 445 323 Antisense
GTACTCAGAATCTCCTTCTCGAAGA 12 461 339 Antisense
TACTTCACTTCATAGGTCATCTCCT 255 645 396 Antisense
CAAATGGTACCCAGCACATCTCGTG 559 191 430 Antisense
TCCGTCGCCCATTTATTCATTTAAA 3 595 540 Antisense
GACTCACCTCCAGACGAGTTCATTC 211 373 571 Antisense
GTCTTCCGACCGCAGCGTAAACTAC 430 447 619 Antisense
Sequence Source Affymetrix Proprietary Database