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[180619_at]

Description H12I19.3 /REP_DB=WormBase Gene ID /WP=CE16175 /TR=O45616 /GB=CAB11537.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 19      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 20.5
(-1.3)
A 		43.6
(3)
A 		11.1
(-3)
A 		42.1
(2.7)
A 		33
B 23.6
(-1.8)
A 		28
(0.5)
A 		21.2
(-3)
A 		33
(3)
A 		12
C 16.3
(-1.6)
A 		3
(-3)
A 		4.6
(-2.8)
A 		60.7
(3)
A 		58
avr 20.1
(-1.6) 		24.9
(-0.7) 		12.3
(-3) 		45.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 46.8
(3)
A 		16.3
(-1.2)
A 		33.6
(1.2)
A 		13.9
(-1.6)
A 		5.2
(-2.8)
A 		3.7
(-3)
A 		43
B 23.3
(1)
A 		33.1
(3)
A 		23.3
(1)
A 		3.5
(-3)
A 		11.2
(-1.4)
A 		19.3
(0.2)
A 		30
C 6
(-2.5)
A 		46.1
(3)
A 		38.7
(2)
A 		5
(-2.6)
A 		2.4
(-3)
A 		7.7
(-2.3)
A 		44
avr 25.4
(1.5) 		31.8
(3) 		31.9
(3) 		7.5
(-2.7) 		6.3
(-3) 		10.2
(-2.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.5
(1.2)
A 		9.5
(3)
A 		2.9
(-3)
A 		6.2
(0)
A 		7
B 7.5
(3)
A 		6.9
(1.6)
A 		4.9
(-3)
A 		7
(1.8)
A 		3
C 5.4
(-0.1)
A 		0.9
(-3)
A 		1.6
(-2.5)
A 		10.2
(3)
A 		9
avr 6.8
(1.7) 		5.8
(0.4) 		3.1
(-3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.6
(3)
A 		5.8
(0.8)
A 		7.3
(2)
A 		3.5
(-1)
A 		1.6
(-2.5)
A 		0.9
(-3)
A 		8
B 8.1
(1.3)
A 		11
(3)
A 		5.7
(-0.1)
A 		0.9
(-3)
A 		4.5
(-0.9)
A 		7.2
(0.7)
A 		10
C 2.2
(-2.4)
A 		14.1
(3)
A 		9.8
(1.1)
A 		1
(-2.9)
A 		0.8
(-3)
A 		2.6
(-2.2)
A 		13
avr 6.3
(0.2) 		10.3
(3) 		7.6
(1.1) 		1.8
(-3) 		2.3
(-2.6) 		3.6
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8894
Sequence Type Exemplar sequence
Representative Public ID H12I19.3 NCBI
Target Description H12I19.3 /REP_DB=WormBase Gene ID /WP=CE16175 /TR=O45616 /GB=CAB11537.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H12I19.3 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:14142050:14143842:1 gene:H12I19.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013882 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14142055-14143848(+) 100.0 100.0
Public Domain and Genome References
Ensembl H12I19.3
Sequence
Target Sequence 
>C. ELEGANS:180619_AT
gaggaaaatgtttcgccgactcagaactttttgcaaagaaaagtgaaatacatttattca
atatttattgtcaaggatttaatatttttactgtgtcttgaaattggaaaagctactgaa
agcaaaagaagaatagtcttggctcaaaattgttatgctgccatattcttctttgtaaac
cttctgatcctcatatctgctatcctctacattccaattgtgagaagtgttgaaaagctt
gcgattgtattatctgctaaacaaagcaaacctcaaaaatacattttatggcagactatg
atagtttttattcttaaaatggtaacttccttcgtgtttatagacattttgattgaagga
gcagctgaaccaattaaagttataccatacatcttactaacagatattgtgataactcct
cttataattcaaatttcatgtttgggatttaacaaacgaaatcttggaatattgctatca
actctcaatattctgcaattttcgaattttgtattaagaaaaacatcaactgtacatccg
atgactatatcagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAAATGTTTCGCCGACTCAGA 5 405 367 Antisense
TCGCCGACTCAGAACTTTTTGCAAA 425 599 379 Antisense
GCTCAAAATTGTTATGCTGCCATAT 499 301 508 Antisense
GCTGCCATATTCTTCTTTGTAAACC 478 297 523 Antisense
TGTAAACCTTCTGATCCTCATATCT 664 559 540 Antisense
TGCTATCCTCTACATTCCAATTGTG 51 581 564 Antisense
ATGGTAACTTCCTTCGTGTTTATAG 30 51 685 Antisense
AAAGTTATACCATACATCTTACTAA 66 123 742 Antisense
TAACTCCTCTTATAATTCAAATTTC 221 639 779 Antisense
CAACTCTCAATATTCTGCAATTTTC 204 189 845 Antisense
GTACATCCGATGACTATATCAGAGA 631 459 898 Antisense
Sequence Source Affymetrix Proprietary Database