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[180617_s_at]

Description Y44A6D.2 /REP_DB=WormBase Gene ID /WP=CE19160 /TR=Q9XXE2 /GB=CAA19515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_highest_8_8 > 48      4grp_high_8_8 > 35      6grp_highest_nonorm > 11      6grp_total > 24      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1132
1 2 3 4 range
A 2309.7
(2.9)
P 		2321.2
(3)
P 		1606.5
(-1.4)
P 		1337.3
(-3)
P 		984
B 2322.4
(3)
P 		2041.4
(1.4)
P 		1631.3
(-0.9)
P 		1268.5
(-3)
P 		1054
C 2400.9
(3)
P 		2294.7
(2.2)
P 		1782.5
(-1.9)
P 		1636.7
(-3)
P 		764
avr 2344.3
(3) 		2219.1
(2.2) 		1673.4
(-1.3) 		1414.2
(-3) 		930

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2288
1 2 3 4 5 6 range
A 1839.9
(3)
P 		1839.4
(3)
P 		1811.3
(2.8)
P 		1138.7
(-1)
P 		849
(-2.6)
P 		780.2
(-3)
P 		1060
B 2118
(3)
P 		1737.4
(1.3)
P 		1513.6
(0.3)
P 		979.4
(-2.2)
P 		797.2
(-3)
P 		1034.6
(-1.9)
P 		1321
C 3068.1
(3)
P 		1761.5
(-0.5)
P 		1452
(-1.3)
P 		831
(-3)
P 		927.1
(-2.7)
P 		1078.6
(-2.3)
P 		2237
avr 2342
(3) 		1779.4
(0.7) 		1592.3
(-0) 		983
(-2.5) 		857.8
(-3) 		964.5
(-2.6) 		1484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 841
(3)
P 		503.9
(-0.1)
P 		420
(-0.9)
P 		195.7
(-3)
P 		645
B 740.6
(3)
P 		504.2
(-0)
P 		378
(-1.6)
P 		270.3
(-3)
P 		470
C 794.8
(3)
P 		659.7
(1.4)
P 		621.3
(1)
P 		276
(-3)
P 		519
avr 792.1
(3) 		555.9
(0.4) 		473.1
(-0.5) 		247.3
(-3) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 970
1 2 3 4 5 6 range
A 339.2
(-1.1)
P 		654.2
(3)
P 		394.5
(-0.4)
P 		288.8
(-1.7)
P 		256.2
(-2.1)
P 		190
(-3)
P 		464
B 737
(3)
P 		578.3
(1)
P 		367.5
(-1.6)
P 		259.4
(-3)
P 		323.9
(-2.2)
P 		385.8
(-1.4)
P 		478
C 1137.2
(3)
P 		537.5
(-0.7)
P 		369.6
(-1.7)
P 		167.1
(-3)
P 		300
(-2.2)
P 		361.1
(-1.8)
P 		970
avr 737.8
(3) 		590
(1.2) 		377.2
(-1.3) 		238.4
(-3) 		293.4
(-2.3) 		312.3
(-2.1) 		499
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180617_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14494
Sequence Type Exemplar sequence
Representative Public ID Y44A6D.2 NCBI
Target Description Y44A6D.2 /REP_DB=WormBase Gene ID /WP=CE19160 /TR=Q9XXE2 /GB=CAA19515.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075610 NCBI Caenorhabditis elegans Y44A6D.2 (Y44A6D.2) mRNA, complete cds. 11/11 None
SNAP00000040627 ENSEMBL cdna:SNAP chromosome:CEL140:V:20787600:20788532:1 11/11 None
GENEFINDER00000040632 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20787600:20788532:1 11/11 None
Y44A6D.2 ENSEMBL cdna:known chromosome:CEL140:V:20787522:20788835:1 gene:Y44A6D.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20787599-20788532(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44A6D.2
Entrez Gene 180360 Entrez gene
SwissProt Q9XXE2 EMBL-EBI
WormBase CE19160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19515 Hypothetical protein Y44A6D.2 [Caenorhabditis elegans] ref|NP_508011.1| Y44A6D.2 [Caenorhabditis elegans] 7.0E-31
blast CAA19515 Hypothetical protein Y44A6D.2 [Caenorhabditis elegans] ref|NP_508011.1| Y44A6D.2 [Caenorhabditis elegans] 3.0E-28
blast CAE61616 Hypothetical protein CBG05539 [Caenorhabditis briggsae] 2.0E-27
blast CAE61616 Hypothetical protein CBG05539 [Caenorhabditis briggsae] 7.0E-25
Sequence
Target Sequence 
>C. ELEGANS:180617_S_AT
tctttcctcaatcttcgataagactaaggatgttttatcaacagccgcagatgcaacgaa
aggatatgcttctcaggcacagcaagctataggaaaaatcatcccaggagccaatcatga
atctgacccgaacgccgccgttgctgcagcccaagctgcatctggacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTCCTCAATCTTCGATAAGACT 544 613 36 Antisense
AAGGATGTTTTATCAACAGCCGCAG 631 159 61 Antisense
TTATCAACAGCCGCAGATGCAACGA 59 681 70 Antisense
GCCGCAGATGCAACGAAAGGATATG 560 285 79 Antisense
AAAGGATATGCTTCTCAGGCACAGC 575 121 94 Antisense
TATGCTTCTCAGGCACAGCAAGCTA 393 655 100 Antisense
TCTCAGGCACAGCAAGCTATAGGAA 241 609 106 Antisense
GGAAAAATCATCCCAGGAGCCAATC 143 529 127 Antisense
AGGAGCCAATCATGAATCTGACCCG 489 55 141 Antisense
CGTTGCTGCAGCCCAAGCTGCATCT 617 245 174 Antisense
GCAGCCCAAGCTGCATCTGGACAAC 36 315 181 Antisense
Sequence Source Affymetrix Proprietary Database