[Home] | [Total List]

[180616_at]

Description T22B7.3 /REP_DB=WormBase Gene ID /WP=CE13944 /TR=Q23042 /GB=AAB04594.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 44      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 527
1 2 3 4 range
A 303.9
(-3)
P 		733.2
(2.6)
P 		765.6
(3)
P 		307.4
(-3)
P 		462
B 321.5
(-2)
P 		681.9
(2.5)
P 		718.9
(3)
P 		245
(-3)
P 		474
C 319.8
(-2.1)
P 		694.3
(2.2)
P 		766.2
(3)
P 		238.9
(-3)
P 		527
avr 315.1
(-2.4) 		703.1
(2.4) 		750.2
(3) 		263.8
(-3) 		486

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2011
1 2 3 4 5 6 range
A 930.7
(-2.5)
P 		1520.9
(-0.8)
P 		2309.9
(1.6)
P 		2780.4
(3)
P 		1956.7
(0.5)
P 		769.5
(-3)
P 		2011
B 1031.2
(-3)
P 		1570
(-0.7)
P 		2243.7
(2.1)
P 		2447.9
(3)
P 		2264.4
(2.2)
P 		1036
(-3)
P 		1417
C 989.1
(-3)
P 		1617.7
(-0.8)
P 		1920.1
(0.3)
P 		2703.5
(3)
P 		1877
(0.1)
P 		998.5
(-3)
P 		1714
avr 983.7
(-2.8) 		1569.5
(-0.8) 		2157.9
(1.3) 		2643.9
(3) 		2032.7
(0.9) 		934.7
(-3) 		1709
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 110.6
(-0.5)
P 		159.2
(1.4)
P 		200.1
(3)
P 		45
(-3)
P 		155
B 102.5
(-0.4)
P 		168.4
(3)
P 		166.6
(2.9)
P 		52.2
(-3)
P 		116
C 105.9
(-1.3)
P 		199.6
(1.2)
P 		267.1
(3)
P 		40.3
(-3)
P 		227
avr 106.3
(-0.8) 		175.7
(1.7) 		211.3
(3) 		45.8
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 748
1 2 3 4 5 6 range
A 171.6
(-3)
P 		540.9
(1.2)
P 		503
(0.7)
P 		705.2
(3)
P 		590.5
(1.7)
P 		187.4
(-2.8)
P 		534
B 358.8
(-3)
P 		522.6
(-1.2)
P 		544.8
(-1)
P 		648.4
(0.1)
P 		920
(3)
P 		386.3
(-2.7)
P 		561
C 366.6
(-2.3)
P 		493.6
(0.5)
P 		488.7
(0.4)
P 		543.7
(1.6)
P 		607.4
(3)
P 		334.3
(-3)
P 		273
avr 299
(-3) 		519
(0.2) 		512.2
(0.1) 		632.4
(1.9) 		706
(3) 		302.7
(-2.9) 		407
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16977
Sequence Type Exemplar sequence
Representative Public ID T22B7.3 NCBI
Target Description T22B7.3 /REP_DB=WormBase Gene ID /WP=CE13944 /TR=Q23042 /GB=AAB04594.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076551 NCBI Caenorhabditis elegans T22B7.3 (T22B7.3) mRNA, complete cds. 11/11 A 
SNAP00000005785 ENSEMBL cdna:SNAP chromosome:CEL140:X:5647339:5647942:1 11/11 None
GENEFINDER00000005793 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5647339:5650068:1 11/11 None
T22B7.3 ENSEMBL cdna:known chromosome:CEL140:X:5647339:5650150:1 gene:T22B7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5647338-5647942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B7.3
Entrez Gene 188723 Entrez gene
SwissProt Q23042 EMBL-EBI
WormBase CE31242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04595 Hypothetical protein T22B7.3 [Caenorhabditis elegans] ref|NP_508952.2| T22B7.3 [Caenorhabditis elegans] emb|CAE68776.1| Hypothetical protein CBG14718 [Caenorhabditis briggsae] 1.0E-157
blast CAB01173 Hypothetical protein F38H4.5 [Caenorhabditis elegans] ref|NP_502245.1| F38H4.5 [Caenorhabditis elegans] 3.0E-75
blast CAE62133 Hypothetical protein CBG06177 [Caenorhabditis briggsae] 7.0E-73
blast T25906 hypothetical protein T22B7.3 - Caenorhabditis elegans 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003198 EMBL-EBI Amidinotransferase 3.7E-63
Pfam IPR003198 EMBL-EBI Amidinotransferase 5.8E-26
Sequence
Target Sequence 
>C. ELEGANS:180616_AT
gtaccctcgagcatcatgtcaaaagaatattaatggtgcgaccgacacatttcgagctga
agtactcgatcaacccatggatggatatgaagagaggagtgaaccgagaaaaagcgttaa
aacaatgggatcagttgaaaaatacaattgagaacagtggagcaaaagttgaggttatgg
agtctacgggagctgaaagccttccagacattgttttcgccgcgaatgcagcaataatca
agggaaataaagcgtacttggcaagtttcgcgcatccagagagacagggagaaagatatt
tctacgagcagtggttcacgaataatggctatgaatgcgtcggagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCCTCGAGCATCATGTCAAAAG 214 459 35 Antisense
TGCGACCGACACATTTCGAGCTGAA 82 583 71 Antisense
GAGCTGAAGTACTCGATCAACCCAT 101 375 88 Antisense
GAGGTTATGGAGTCTACGGGAGCTG 361 403 205 Antisense
GTCTACGGGAGCTGAAAGCCTTCCA 708 467 216 Antisense
AAAGCCTTCCAGACATTGTTTTCGC 281 125 230 Antisense
TTTTCGCCGCGAATGCAGCAATAAT 282 675 248 Antisense
GTACTTGGCAAGTTTCGCGCATCCA 92 461 288 Antisense
GTTTCGCGCATCCAGAGAGACAGGG 455 451 299 Antisense
GATATTTCTACGAGCAGTGGTTCAC 199 427 329 Antisense
AATGGCTATGAATGCGTCGGAGATC 92 163 358 Antisense
Sequence Source Affymetrix Proprietary Database