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[180614_at]

Description T17H7.7 /REP_DB=WormBase Gene ID /WP=CE07508 /TR=Q22539 /GB=AAC48172.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 54      6grp_total > 83      4grp_total > 57      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1547
1 2 3 4 range
A 167.5
(-2.6)
P 		1337.8
(2.4)
P 		1476.8
(3)
P 		69.2
(-3)
A 		1408
B 135.5
(-2.8)
P 		1210.3
(1.4)
P 		1616.3
(3)
P 		97.2
(-3)
A 		1519
C 121
(-3)
P 		1158.1
(1.5)
P 		1519.3
(3)
P 		132.1
(-3)
A 		1398
avr 141.3
(-2.8) 		1235.4
(1.7) 		1537.5
(3) 		99.5
(-3) 		1438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1669
1 2 3 4 5 6 range
A 247.7
(-3)
P 		966.3
(-0.4)
P 		560.8
(-1.8)
P 		1185.3
(0.5)
P 		1876.7
(3)
P 		700.8
(-1.3)
P 		1629
B 288.8
(-3)
P 		893
(-0.3)
P 		733.1
(-1)
P 		1310.7
(1.6)
P 		1618.2
(3)
P 		724.8
(-1)
P 		1329
C 208.2
(-3)
P 		989.3
(-0.2)
P 		619.7
(-1.5)
P 		1224
(0.7)
P 		1869.6
(3)
P 		706.2
(-1.2)
P 		1661
avr 248.2
(-3) 		949.5
(-0.3) 		637.9
(-1.5) 		1240
(0.9) 		1788.2
(3) 		710.6
(-1.2) 		1540
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 61
(-2.2)
P 		290.4
(1.5)
P 		386.1
(3)
P 		10.1
(-3)
A 		376
B 43.2
(-2.6)
P 		298.9
(1.7)
P 		374.5
(3)
P 		20.7
(-3)
A 		354
C 40
(-2.8)
P 		332.9
(0.7)
P 		529.5
(3)
P 		22.3
(-3)
A 		507
avr 48.1
(-2.6) 		307.4
(1.2) 		430
(3) 		17.7
(-3) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 45.7
(-3)
P 		343.7
(0.4)
P 		122.1
(-2.1)
P 		300.6
(-0.1)
P 		566.3
(3)
P 		170.6
(-1.6)
P 		521
B 100.5
(-3)
P 		297.3
(-0.9)
P 		178
(-2.2)
P 		347.2
(-0.3)
P 		657.4
(3)
P 		270.3
(-1.2)
P 		557
C 77.2
(-3)
P 		301.9
(-0.4)
P 		157.7
(-2.1)
P 		246.1
(-1.1)
P 		605
(3)
P 		236.4
(-1.2)
P 		528
avr 74.5
(-3) 		314.3
(-0.3) 		152.6
(-2.1) 		298
(-0.5) 		609.6
(3) 		225.8
(-1.3) 		535
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8164
Sequence Type Exemplar sequence
Representative Public ID T17H7.7 NCBI
Target Description T17H7.7 /REP_DB=WormBase Gene ID /WP=CE07508 /TR=Q22539 /GB=AAC48172.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064850 NCBI Caenorhabditis elegans T17H7.7 (T17H7.7) mRNA, complete cds. 11/11 A 
SNAP00000038491 ENSEMBL cdna:SNAP chromosome:CEL140:III:755842:758069:-1 11/11 None
T17H7.7 ENSEMBL cdna:known chromosome:CEL140:III:755373:758069:-1 gene:T17H7.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038507 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:755557-758072(-) 98.13 98.13
Public Domain and Genome References
Gene Title
Ensembl T17H7.7
Entrez Gene 175229 Entrez gene
SwissProt Q22539 EMBL-EBI
WormBase CE32725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48172 Hypothetical protein T17H7.7 [Caenorhabditis elegans] ref|NP_497251.2| T17H7.7 [Caenorhabditis elegans] 0.0
blast AAC48172 Hypothetical protein T17H7.7 [Caenorhabditis elegans] ref|NP_497251.2| T17H7.7 [Caenorhabditis elegans] 1.0E-153
blast CAE69198 Hypothetical protein CBG15238 [Caenorhabditis briggsae] 1.0E-123
blast CAE69198 Hypothetical protein CBG15238 [Caenorhabditis briggsae] 8.0E-96
Sequence
Target Sequence 
>C. ELEGANS:180614_AT
ggaagaagactactccgttgcgactacagcgccaccacctcaaatgcatattcgcagcga
agaaaacctcatccttcaacgcaacaacctcaaacatcaccccatcaaactgcaagaaaa
gaaacttccagagagtcttgaatctgaagaaatctctcaaggatcgataaaaacttcttt
aacccatcttccaatttttgtggcaaacgaggaagaggacgtggcatcactgaatccaaa
gtctgcgcttcataaaagaatactaattgcctcccaggaccgggagaaggagagtgatag
agatctgttagtggactttgctacaggagcaccgctggatctatcggaacctgatgtgac
caagtcaaagtatgaagcttcaccggttgccacttctccagcaacacttgcaccggctca
agtgacaactcggcctgtagcaccaccaagattaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAAGACTACTCCGTTGCGACT 579 529 840 Antisense
CCACCACCTCAAATGCATATTCGCA 691 273 871 Antisense
CATCACCCCATCAAACTGCAAGAAA 505 213 934 Antisense
TCTTTAACCCATCTTCCAATTTTTG 674 219 1015 Antisense
GAGGACGTGGCATCACTGAATCCAA 411 403 1054 Antisense
GAATCCAAAGTCTGCGCTTCATAAA 203 329 1071 Antisense
AAAGAATACTAATTGCCTCCCAGGA 120 123 1094 Antisense
GTGGACTTTGCTACAGGAGCACCGC 321 491 1150 Antisense
GAGCACCGCTGGATCTATCGGAACC 639 389 1166 Antisense
GCACCGGCTCAAGTGACAACTCGGC 121 315 1249 Antisense
GCCTGTAGCACCACCAAGATTAAAC 537 265 1272 Antisense
Sequence Source Affymetrix Proprietary Database