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[180613_at]

Description F55G1.1 /REP_DB=WormBase Gene ID /WP=CE07279 /TR=Q20850 /GB=AAB00651.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 02      4grp_total > 42      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 41.8
(-3)
A 		77.2
(3)
P 		72.8
(2.3)
P 		65.3
(1)
A 		35
B 20.5
(-3)
A 		132.7
(3)
P 		99.5
(1.2)
P 		29.1
(-2.5)
A 		112
C 40.9
(-3)
A 		137.7
(3)
P 		96.6
(0.5)
P 		70.4
(-1.2)
A 		97
avr 34.4
(-3) 		115.9
(3) 		89.6
(1.1) 		54.9
(-1.5) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 60.5
(-1.1)
A 		101.9
(3)
P 		41.7
(-3)
A 		45.7
(-2.6)
P 		84.7
(1.3)
P 		51.8
(-2)
A 		60
B 79.2
(0.1)
M 		108.6
(3)
P 		78.5
(-0)
P 		63.9
(-1.5)
P 		67.7
(-1.1)
P 		48.8
(-3)
P 		60
C 78.7
(3)
P 		70.2
(2.1)
A 		22.6
(-3)
A 		52.4
(0.2)
A 		67.4
(1.8)
M 		46.7
(-0.4)
A 		56
avr 72.8
(0.3) 		93.6
(3) 		47.6
(-3) 		54
(-2.2) 		73.3
(0.4) 		49.1
(-2.8) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 15.2
(0.6)
A 		16.8
(1.6)
P 		19
(3)
P 		9.6
(-3)
A 		9
B 6.5
(-2.9)
A 		32.8
(3)
P 		23.1
(0.8)
P 		6.2
(-3)
A 		27
C 13.6
(-2.6)
A 		39.6
(3)
P 		33.7
(1.7)
P 		11.9
(-3)
A 		28
avr 11.8
(-2.2) 		29.7
(3) 		25.3
(1.7) 		9.2
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.2
(-2.5)
A 		36.2
(3)
P 		9.1
(-3)
A 		11.6
(-2.4)
P 		25.6
(0.7)
P 		12.6
(-2.2)
A 		27
B 27.5
(0.3)
M 		36.1
(3)
P 		19.1
(-2.3)
P 		16.9
(-3)
P 		27.5
(0.3)
P 		18.2
(-2.6)
P 		19
C 29.2
(3)
P 		21.4
(1)
A 		5.8
(-3)
A 		10.5
(-1.8)
A 		21.8
(1.1)
M 		15.6
(-0.5)
A 		23
avr 22.6
(0.4) 		31.2
(3) 		11.3
(-3) 		13
(-2.5) 		25
(1.1) 		15.5
(-1.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9263
Sequence Type Exemplar sequence
Representative Public ID F55G1.1 NCBI
Target Description F55G1.1 /REP_DB=WormBase Gene ID /WP=CE07279 /TR=Q20850 /GB=AAB00651.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068804(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068804 NCBI Caenorhabditis elegans F55G1.1 (F55G1.1) mRNA, complete cds. 11/11 None
SNAP00000005175 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7491755:7493725:1 11/11 None
GENEFINDER00000005178 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7491755:7493725:1 11/11 None
F55G1.1 ENSEMBL cdna:known chromosome:CEL140:IV:7491834:7493725:1 gene:F55G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7491818-7493731(+) 97.12 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.1
Entrez Gene 186324 Entrez gene
SwissProt Q20850 EMBL-EBI
WormBase CE34885 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00651 Hypothetical protein F55G1.1 [Caenorhabditis elegans] ref|NP_501205.2| F55G1.1 [Caenorhabditis elegans] 1.0E-123
blast AAB00651 Hypothetical protein F55G1.1 [Caenorhabditis elegans] ref|NP_501205.2| F55G1.1 [Caenorhabditis elegans] 1.0E-117
blast CAE61897 Hypothetical protein CBG05888 [Caenorhabditis briggsae] 1.0E-111
blast CAE61897 Hypothetical protein CBG05888 [Caenorhabditis briggsae] 1.0E-105
blast CAE61897 Hypothetical protein CBG05888 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501205.2 1 233-255
F55G1.1 1 233-255
SNAP00000005175 1 299-321
GENEFINDER00000005178 1 306-328
Sequence
Target Sequence 
>C. ELEGANS:180613_AT
acaacctcacaagattgggcacagcaacaacaacaacatcaacaacatcatgaatttcaa
ccaaattgttctattcctatgcaaaggcatccaatatctcgatcagcttcatttgttgca
ccaactccaatgattgtatatggaatgcctccacctggagatagaatgtcagttatggat
ggtcgatgtgacagtagaattggagaatatgcaatgcctttatactatatgccagctcca
ccaccacctcaaccaatgtttcttccatatccaggatcaaaaatgggaatgagtccattt
gatcaaccaagtatggttatgatgcctggacatcatgttatgcaatatccagaagtacaa
atgagacgaaaaatgaaatcaggtggagcaaatgcacacagacggaaatcctggtgttca
aggatttgttgcgcgggatttgcacagttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCTCACAAGATTGGGCACAGC 34 113 430 Antisense
GGCATCCAATATCTCGATCAGCTTC 615 535 515 Antisense
CGATCAGCTTCATTTGTTGCACCAA 423 249 529 Antisense
GTATATGGAATGCCTCCACCTGGAG 513 453 565 Antisense
TTTATACTATATGCCAGCTCCACCA 55 673 648 Antisense
AATGTTTCTTCCATATCCAGGATCA 693 163 684 Antisense
GAATGAGTCCATTTGATCAACCAAG 316 331 716 Antisense
GATGCCTGGACATCATGTTATGCAA 253 415 750 Antisense
GCAAATGCACACAGACGGAAATCCT 488 317 817 Antisense
GGTGTTCAAGGATTTGTTGCGCGGG 37 265 842 Antisense
GTTGCGCGGGATTTGCACAGTTACT 25 441 857 Antisense
Sequence Source Affymetrix Proprietary Database