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[180612_s_at]

Description F53A9.8 /REP_DB=WormBase Gene ID /WP=CE02768 /TR=Q20693 /GB=AAC46563.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 04      6grp_total > 29      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4209
1 2 3 4 range
A 5090.2
(3)
P 		3771.1
(0.3)
P 		2526.2
(-2.2)
P 		2126.2
(-3)
P 		2964
B 5507.5
(3)
P 		3122.4
(-1.1)
P 		3310.6
(-0.8)
P 		2007.5
(-3)
P 		3500
C 5922.5
(3)
P 		3579.7
(-0.3)
P 		2486.3
(-1.9)
P 		1713.7
(-3)
P 		4209
avr 5506.7
(3) 		3491.1
(-0.4) 		2774.4
(-1.6) 		1949.1
(-3) 		3558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3170
1 2 3 4 5 6 range
A 5808.3
(3)
P 		4151.4
(-0.8)
P 		4475.7
(-0)
P 		3163.8
(-3)
P 		3883.8
(-1.4)
P 		3378.1
(-2.5)
P 		2645
B 4873.4
(3)
P 		4427.3
(1.7)
P 		4381
(1.6)
P 		2819.2
(-3)
P 		4784
(2.7)
P 		4153.8
(0.9)
P 		2054
C 5988.8
(3)
P 		3974.2
(-1.5)
P 		3281.9
(-3)
P 		3656.8
(-2.2)
P 		5405.7
(1.7)
P 		5725.1
(2.4)
P 		2707
avr 5556.8
(3) 		4184.3
(-0.5) 		4046.2
(-0.9) 		3213.3
(-3) 		4691.2
(0.8) 		4419
(0.1) 		2344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1672
1 2 3 4 range
A 1853.4
(3)
P 		818.6
(-1)
P 		660.4
(-1.6)
P 		311.2
(-3)
P 		1542
B 1756.3
(3)
P 		771.2
(-1.4)
P 		767.1
(-1.5)
P 		427.8
(-3)
P 		1329
C 1960.5
(3)
P 		1029.2
(-0.3)
P 		866.6
(-0.9)
P 		289
(-3)
P 		1672
avr 1856.7
(3) 		873
(-0.9) 		764.7
(-1.3) 		342.7
(-3) 		1514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1484
1 2 3 4 5 6 range
A 1070.7
(-0.6)
P 		1476.4
(3)
P 		974.7
(-1.5)
P 		802.4
(-3)
P 		1172
(0.3)
P 		822.5
(-2.8)
P 		674
B 1695.7
(1.8)
P 		1473.7
(0.6)
P 		1063.8
(-1.4)
P 		746.7
(-3)
P 		1943.7
(3)
P 		1548.9
(1)
P 		1197
C 2219.8
(3)
P 		1212.7
(-1.1)
P 		835.3
(-2.6)
P 		735.4
(-3)
P 		1749.2
(1.1)
P 		1916.5
(1.8)
P 		1484
avr 1662.1
(3) 		1387.6
(1.2) 		957.9
(-1.7) 		761.5
(-3) 		1621.6
(2.7) 		1429.3
(1.4) 		901
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180612_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16955
Sequence Type Exemplar sequence
Representative Public ID F53A9.8 NCBI
Target Description F53A9.8 /REP_DB=WormBase Gene ID /WP=CE02768 /TR=Q20693 /GB=AAC46563.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077076 NCBI Caenorhabditis elegans F53A9.8 (F53A9.8) mRNA, complete cds. 11/11 None
SNAP00000001078 ENSEMBL cdna:SNAP chromosome:CEL140:X:8718579:8718842:-1 11/11 None
GENEFINDER00000001081 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8718579:8718842:-1 11/11 None
F53A9.8.2 ENSEMBL cdna:known chromosome:CEL140:X:8718461:8718842:-1 gene:F53A9.8 11/11 None
F53A9.8.1 ENSEMBL cdna:known chromosome:CEL140:X:8718463:8718842:-1 gene:F53A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8718577-8718841(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.8
Entrez Gene 181118 Entrez gene
SwissProt Q20693 EMBL-EBI
WormBase CE02768 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:180612_S_AT
gaacacggacacggagatggtgatcatcacgaccaccacgatgaacatcatcatgaggac
catcacgagcatggagctgatggagagcatgttcaccatgcaggagatcactgcgacacc
caacatgggggcaaccatcaggctggagagcactgcgctaaaactcaacaccaagatgga
gaacaccacgagcaacatcacgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACGGACACGGAGATGGTGATC 47 353 25 Antisense
GATGGTGATCATCACGACCACCACG 7 409 40 Antisense
CACGACCACCACGATGAACATCATC 494 199 52 Antisense
GAGGACCATCACGAGCATGGAGCTG 345 403 79 Antisense
CATGTTCACCATGCAGGAGATCACT 55 211 112 Antisense
TCACTGCGACACCCAACATGGGGGC 440 623 132 Antisense
ACATGGGGGCAACCATCAGGCTGGA 271 107 147 Antisense
ATCAGGCTGGAGAGCACTGCGCTAA 40 29 161 Antisense
CACTGCGCTAAAACTCAACACCAAG 387 197 175 Antisense
AACACCAAGATGGAGAACACCACGA 407 135 191 Antisense
GAACACCACGAGCAACATCACGATG 79 353 205 Antisense
Sequence Source Affymetrix Proprietary Database