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[180610_at]

Description F14B8.3 /REP_DB=WormBase Gene ID /WP=CE02646 /TR=Q19442 /GB=AAA68272.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 19      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 61
(-2.2)
A 		97.4
(-0.8)
A 		40.8
(-3)
A 		192
(3)
P 		151
B 54.6
(-3)
A 		99.1
(1.5)
M 		62.5
(-2.2)
P 		113.8
(3)
P 		59
C 91.1
(-0.7)
A 		114
(0.1)
P 		24.5
(-3)
A 		199.4
(3)
P 		175
avr 68.9
(-1.7) 		103.5
(-0.1) 		42.6
(-3) 		168.4
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 113.8
(0.6)
P 		51.8
(-1.9)
A 		25.3
(-3)
A 		101.7
(0.1)
P 		171.7
(3)
P 		99.6
(0)
P 		146
B 77.5
(-1.4)
P 		105.3
(-0.3)
A 		37.7
(-3)
A 		94.1
(-0.7)
A 		186.6
(3)
P 		104.7
(-0.3)
P 		149
C 66.8
(-3)
P 		90.2
(-2.1)
P 		78.3
(-2.5)
A 		84.5
(-2.3)
P 		218.2
(3)
P 		102.7
(-1.6)
P 		151
avr 86
(-1.4) 		82.4
(-1.5) 		47.1
(-3) 		93.4
(-1.1) 		192.2
(3) 		102.3
(-0.7) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 22.2
(1)
A 		21.1
(0.6)
A 		10.7
(-3)
A 		28.1
(3)
P 		17
B 17.4
(-1.3)
A 		24.5
(3)
M 		14.5
(-3)
P 		24.2
(2.8)
P 		10
C 30.2
(2.2)
A 		32.8
(2.8)
P 		8.5
(-3)
A 		33.6
(3)
P 		25
avr 23.3
(1.2) 		26.1
(2.1) 		11.2
(-3) 		28.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 21
(-1)
P 		18.4
(-1.3)
A 		5.5
(-3)
A 		25.8
(-0.4)
P 		51.8
(3)
P 		24.2
(-0.6)
P 		46
B 27
(-1.4)
P 		35
(-0.7)
A 		9.2
(-3)
A 		24.9
(-1.6)
A 		75.8
(3)
P 		39.1
(-0.3)
P 		67
C 24.8
(-2.1)
P 		27.5
(-1.8)
P 		19.9
(-2.7)
A 		17
(-3)
P 		70.6
(3)
P 		34.4
(-1.1)
P 		54
avr 24.3
(-1.6) 		27
(-1.3) 		11.5
(-3) 		22.6
(-1.8) 		66.1
(3) 		32.6
(-0.7) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16918
Sequence Type Exemplar sequence
Representative Public ID F14B8.3 NCBI
Target Description F14B8.3 /REP_DB=WormBase Gene ID /WP=CE02646 /TR=Q19442 /GB=AAA68272.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076766 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-23) (pes-23) mRNA, complete cds. 11/11 None
GENEFINDER00000027549 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6901935:6904975:1 11/11 None
F14B8.3 ENSEMBL cdna:known chromosome:CEL140:X:6901366:6904273:1 gene:F14B8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027538 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6901380-6904273(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-23
Ensembl F14B8.3
Entrez Gene 180963 Entrez gene
SwissProt Q19442 EMBL-EBI
WormBase CE02646 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68272 Patterned expression site protein 23 [Caenorhabditis elegans] ref|NP_509167.1| Patterned Expression Site family member (pes-23) [Caenorhabditis elegans] 0.0
blast CAE65816 Hypothetical protein CBG10927 [Caenorhabditis briggsae] 0.0
blast AAA68272 Patterned expression site protein 23 [Caenorhabditis elegans] ref|NP_509167.1| Patterned Expression Site family member (pes-23) [Caenorhabditis elegans] 1.0E-129
blast CAE65816 Hypothetical protein CBG10927 [Caenorhabditis briggsae] 1.0E-119
blast AAD14736 Hypothetical protein T12B3.2 [Caenorhabditis elegans] ref|NP_501177.1| T12B3.2 [Caenorhabditis elegans] 1.0E-32
blast AAA68273 Hypothetical protein F14B8.2 [Caenorhabditis elegans] ref|NP_509168.1| F14B8.2 [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.2E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 1.9E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 1.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509167.1 10 10-32,53-70,85-102,115-137,141-163,192-214,292-314,319-341,351-373,411-433
F14B8.3 10 10-32,53-70,85-102,115-137,141-163,192-214,292-314,319-341,351-373,411-433
GENEFINDER00000027549 8 21-43,47-69,126-143,147-169,174-196,206-228,266-288,388-407
Sequence
Target Sequence 
>C. ELEGANS:180610_AT
gcattacctggtggaattcgctcaaaaccgctaacatttcgacaaatttggaaaaaagaa
aaatacagaaatgttattattttgtttggttctatctgggtaatgaccaatttcaccgca
actattcagatgcttcttgccggagtacctgccatttgtaaaattcttcttggtttggta
gaaatatattttggaattattagccgtcgaaatcttcatttgatttctctttgtataaac
ggaatctccatgtgtgcatccggagtgctcatactctttggacttcaaaaaaactaccca
acaatttatgtattagtgttccttattggatacgcgtcaatcgaatttatttgggatgca
tgttacctttgcgttgtggaacaagttcccaccgaagttcgaggtaccattagtggagca
tgctcatttctgtcaagactttctggaatactggcctccaaaatgacaattgtgaagcaa
agatgggaacccgcacctcttttcatcgcttttgccaccgccatcatacatttcttaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTACCTGGTGGAATTCGCTCAA 6 307 754 Antisense
ATTCGCTCAAAACCGCTAACATTTC 684 7 769 Antisense
TGACCAATTTCACCGCAACTATTCA 71 571 857 Antisense
TATTCAGATGCTTCTTGCCGGAGTA 657 663 876 Antisense
CCATGTGTGCATCCGGAGTGCTCAT 314 271 1001 Antisense
AGTGCTCATACTCTTTGGACTTCAA 446 59 1017 Antisense
GGGATGCATGTTACCTTTGCGTTGT 102 497 1106 Antisense
GAGCATGCTCATTTCTGTCAAGACT 356 389 1169 Antisense
GACTTTCTGGAATACTGGCCTCCAA 625 369 1190 Antisense
AGCAAAGATGGGAACCCGCACCTCT 392 75 1229 Antisense
CACCGCCATCATACATTTCTTAATT 313 201 1269 Antisense
Sequence Source Affymetrix Proprietary Database