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[180608_at]

Description R08C7.5 /REP_DB=WormBase Gene ID /WP=CE07428 /TR=Q21839 /GB=AAC48071.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 40      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 26.4
(-3)
A 		34.7
(-1.8)
A 		69.2
(3)
A 		65
(2.4)
A 		43
B 34.1
(-1.3)
A 		24.3
(-2.6)
A 		67.8
(3)
A 		21
(-3)
A 		47
C 12.3
(-2.5)
A 		11.7
(-3)
A 		19.1
(3)
A 		14.6
(-0.6)
A 		7
avr 24.3
(-2.9) 		23.6
(-3) 		52
(3) 		33.5
(-0.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 8.6
(-3)
A 		18.2
(-2.1)
A 		15.4
(-2.4)
A 		72.8
(3)
A 		61.5
(1.9)
A 		72.6
(3)
A 		64
B 14.8
(-3)
A 		49
(0.2)
A 		43.7
(-0.3)
A 		26
(-2)
A 		73.9
(2.5)
A 		79
(3)
A 		64
C 24
(-2.2)
A 		45.1
(-0)
A 		16.5
(-3)
A 		44.4
(-0.1)
A 		39.7
(-0.6)
A 		74.5
(3)
A 		58
avr 15.8
(-3) 		37.4
(-0.8) 		25.2
(-2.1) 		47.7
(0.2) 		58.4
(1.3) 		75.4
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.6
(-1.8)
A 		7.5
(-3)
A 		18.1
(3)
A 		9.5
(-1.9)
A 		11
B 10.9
(0.4)
A 		6
(-2.2)
A 		15.7
(3)
A 		4.5
(-3)
A 		11
C 4.1
(-0.7)
A 		3.4
(-1.7)
A 		6.7
(3)
A 		2.5
(-3)
A 		4
avr 8.2
(-1) 		5.6
(-2.9) 		13.5
(3) 		5.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.6
(-3)
A 		6.5
(-1.3)
A 		3.4
(-2.4)
A 		18.5
(3)
A 		18.6
(3)
A 		17.7
(2.7)
A 		17
B 5.1
(-3)
A 		16.3
(-0.3)
A 		10.6
(-1.7)
A 		6.9
(-2.6)
A 		30
(3)
A 		29.4
(2.9)
A 		25
C 8.9
(-1.6)
A 		13.8
(-0.2)
A 		4.2
(-3)
A 		8.9
(-1.6)
A 		12.8
(-0.5)
A 		25
(3)
A 		21
avr 5.2
(-3) 		12.2
(-0.8) 		6.1
(-2.7) 		11.4
(-1) 		20.5
(1.9) 		24
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10929
Sequence Type Exemplar sequence
Representative Public ID R08C7.5 NCBI
Target Description R08C7.5 /REP_DB=WormBase Gene ID /WP=CE07428 /TR=Q21839 /GB=AAC48071.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068161 NCBI Caenorhabditis elegans R08C7.5 (R08C7.5) mRNA, complete cds. 11/11 None
SNAP00000031355 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4430338:4432340:1 10/11 None
GENEFINDER00000031366 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4429876:4432340:1 11/11 None
R08C7.5 ENSEMBL cdna:known chromosome:CEL140:IV:4429876:4432340:1 gene:R08C7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4429692-4432346(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.5
Entrez Gene 177207 Entrez gene
SwissProt Q21839 EMBL-EBI
WormBase CE30295 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48071 Hypothetical protein R08C7.5 [Caenorhabditis elegans] ref|NP_500562.2| R08C7.5 [Caenorhabditis elegans] 0.0
blast CAE60296 Hypothetical protein CBG03880 [Caenorhabditis briggsae] 2.0E-12
blast NP_490956 InCenP homolog family member (icp-1) [Caenorhabditis elegans] gb|AAG24400.1| incenp-like protein ICP-1 [Caenorhabditis elegans] gb|AAK39616.1| Incenp homolog protein 1 [Caenorhabditis elegans] 2.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR005635 EMBL-EBI Inner centromere protein, ARK binding region 1.1E-27
Pfam IPR005635 EMBL-EBI Inner centromere protein, ARK binding region 1.1E-27
Sequence
Target Sequence 
>C. ELEGANS:180608_AT
aggaggtgcagaaggttcccagctcaccaccaccaaagcttccgaaaaccgtagtgcaac
cttcgaaagaagagaagccaactgctaaaacagcggctccaccagtgaaacttctcacaa
gttccccaccaccaaagatcccaaaaaccgtagctcaacctccgaaagaaaagaaaccag
tcatggaatctgtgaaaaccgcggctccaccagcgaaggagatcaagccgattgttgcca
aaataacggagaaagcggcagaacctgcagttccaaaggaagtgaaaccggcaaaagcag
caacagccaaaccggcaaagcccgtcatgtcgtacaaaatgactccaacacgcgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGGTGCAGAAGGTTCCCAGCTC 299 55 1166 Antisense
GCTTCCGAAAACCGTAGTGCAACCT 525 299 1203 Antisense
CCAACTGCTAAAACAGCGGCTCCAC 475 275 1243 Antisense
GCTCCACCAGTGAAACTTCTCACAA 142 299 1261 Antisense
ATGGAATCTGTGAAAACCGCGGCTC 232 53 1348 Antisense
GCGGCTCCACCAGCGAAGGAGATCA 570 293 1366 Antisense
GGAGATCAAGCCGATTGTTGCCAAA 266 519 1383 Antisense
GAAAGCGGCAGAACCTGCAGTTCCA 539 359 1416 Antisense
CAACAGCCAAACCGGCAAAGCCCGT 632 189 1466 Antisense
CAAAGCCCGTCATGTCGTACAAAAT 293 191 1481 Antisense
ACAAAATGACTCCAACACGCGTCCA 135 113 1499 Antisense
Sequence Source Affymetrix Proprietary Database