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[180607_at]

Description C10G6.1 /REP_DB=WormBase Gene ID /WP=CE27677 /TR=Q17902 /GB=AAB00620.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 32      6grp_total > 50      4grp_total > 39      6grp_highest_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 627
1 2 3 4 range
A 1374.3
(3)
P 		768.7
(-2.8)
P 		747.7
(-3)
P 		900.9
(-1.5)
P 		627
B 1360.7
(3)
P 		996.4
(-1.5)
P 		872.3
(-3)
P 		1242.5
(1.5)
P 		488
C 1241.4
(3)
P 		1012.9
(-1)
P 		895.1
(-3)
P 		932.8
(-2.3)
P 		346
avr 1325.5
(3) 		926
(-1.9) 		838.4
(-3) 		1025.4
(-0.7) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 805
1 2 3 4 5 6 range
A 1185
(1.5)
P 		1263.1
(2.3)
P 		1151
(1.2)
P 		1326.3
(3)
P 		955.4
(-0.9)
P 		755.3
(-3)
P 		571
B 1485.2
(3)
P 		1258.8
(1.2)
P 		1270.9
(1.3)
P 		1310.1
(1.6)
P 		785.8
(-2.5)
P 		723.2
(-3)
P 		762
C 1302.1
(1.1)
P 		1339.6
(1.4)
P 		1303.7
(1.1)
P 		1528
(3)
P 		910.8
(-2.2)
P 		812.3
(-3)
P 		716
avr 1324.1
(2.4) 		1287.2
(2) 		1241.9
(1.6) 		1388.1
(3) 		884
(-1.8) 		763.6
(-3) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 500.4
(3)
P 		166.9
(-2.4)
P 		195.5
(-2)
P 		131.9
(-3)
P 		369
B 433.9
(3)
P 		246.1
(-1.9)
P 		202.1
(-3)
P 		264.8
(-1.4)
P 		232
C 410.9
(3)
P 		291.2
(0.2)
P 		312
(0.7)
P 		157.3
(-3)
P 		254
avr 448.4
(3) 		234.7
(-1.9) 		236.5
(-1.8) 		184.7
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 218.4
(-2.2)
P 		449.2
(3)
P 		250.7
(-1.5)
P 		336.4
(0.4)
P 		288.3
(-0.6)
P 		183.9
(-3)
P 		265
B 516.8
(3)
P 		419
(0.6)
P 		308.6
(-2.1)
P 		347
(-1.1)
P 		319.3
(-1.8)
P 		269.7
(-3)
P 		247
C 482.6
(3)
P 		408.8
(0.9)
P 		331.8
(-1.3)
P 		307.3
(-2)
P 		294.7
(-2.4)
P 		271.9
(-3)
P 		211
avr 405.9
(2.4) 		425.7
(3) 		297
(-1.2) 		330.2
(-0.1) 		300.8
(-1.1) 		241.8
(-3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11254
Sequence Type Exemplar sequence
Representative Public ID C10G6.1 NCBI
Target Description C10G6.1 /REP_DB=WormBase Gene ID /WP=CE27677 /TR=Q17902 /GB=AAB00620.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026153(10), NM_001026152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026153 NCBI Caenorhabditis elegans C10G6.1b (C10G6.1) mRNA, complete cds. 10/11 None
NM_001026152 NCBI Caenorhabditis elegans C10G6.1a (C10G6.1) mRNA, complete cds. 11/11 None
SNAP00000039814 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5826534:5829913:1 11/11 None
GENEFINDER00000039826 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5826762:5829913:1 11/11 None
C10G6.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:5820355:5830174:1 gene:C10G6.1 10/11 None
C10G6.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:5824778:5830174:1 gene:C10G6.1 10/11 None
C10G6.1a ENSEMBL cdna:known chromosome:CEL140:IV:5824875:5830202:1 gene:C10G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5824880-5829919(+) 100.0 100.0
Public Domain and Genome References
Ensembl C10G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05593 Hypothetical protein C10G6.1b [Caenorhabditis elegans] ref|NP_001021324.1| C10G6.1b [Caenorhabditis elegans] 0.0
blast AAB00620 Hypothetical protein C10G6.1a [Caenorhabditis elegans] ref|NP_001021323.1| C10G6.1a [Caenorhabditis elegans] 0.0
blast CAE72644 Hypothetical protein CBG19850 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 4.8E-7
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 4.8E-7
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 4.8E-7
Sequence
Target Sequence 
>C. ELEGANS:180607_AT
gttgcatctctattggctcataagtatgcagttcacatgagaaatgttttcgatactcag
gttgctcactcacttcttcaacacgagaaattcaacaaatctctgaatgaaatgcgtcca
atatcattcatcaaccttcaacgtgtctattatccacagtcaattatgctcagcgacgtg
actccacggaaaatgagcatgtgcccgaactggggtgtccgaccaatcacagaagaattc
cagttgacaattgtggaagaagctcattgccttctttcagctctctatcaatctctctca
aatctgattccggtgcatttacgtggtgtatttgaagataaatgcatcgaggtaaaccat
ccagaggttctcctagcatcacccaatcgtccaccacctcaaccattcatttcttcccca
tatcgtgcttcaactcgtcgtgatgttcgaaatggtggatcaataatgcaatcattctca
ccagctccatatgcagctgctccgcgtccacaaatgtcggatgcatgcacccaaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCATCTCTATTGGCTCATAAGT 407 439 1276 Antisense
GTTTTCGATACTCAGGTTGCTCACT 702 447 1321 Antisense
AATATCATTCATCAACCTTCAACGT 607 171 1395 Antisense
AATTATGCTCAGCGACGTGACTCCA 289 175 1437 Antisense
GAGCATGTGCCCGAACTGGGGTGTC 182 387 1470 Antisense
TCTCTATCAATCTCTCTCAAATCTG 295 613 1557 Antisense
GATTCCGGTGCATTTACGTGGTGTA 682 431 1581 Antisense
AACCATCCAGAGGTTCTCCTAGCAT 368 147 1630 Antisense
GCTTCAACTCGTCGTGATGTTCGAA 554 305 1702 Antisense
CACCAGCTCCATATGCAGCTGCTCC 125 203 1754 Antisense
ATGTCGGATGCATGCACCCAAACGT 498 31 1789 Antisense
Sequence Source Affymetrix Proprietary Database