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[180605_s_at]

Description C39E9.11 /REP_DB=WormBase Gene ID /WP=CE20559 /TR=Q18535 /GB=CAA94340.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 74      6grp_total > 85      4grp_total > 04      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 757
1 2 3 4 range
A 579.6
(-1.6)
P 		515.5
(-2.3)
P 		451.2
(-3)
P 		1016
(3)
P 		565
B 664.3
(0.5)
P 		349.6
(-3)
P 		467.1
(-1.7)
P 		884.9
(3)
P 		535
C 606.5
(-1.6)
P 		456.2
(-3)
P 		458.8
(-3)
P 		1106.2
(3)
P 		650
avr 616.8
(-1.1) 		440.4
(-3) 		459
(-2.8) 		1002.4
(3) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 848.2
(3)
P 		554
(-1.5)
P 		726.2
(1.1)
P 		457
(-3)
P 		786.8
(2.1)
P 		618.1
(-0.5)
P 		391
B 590.4
(-2.3)
P 		552.2
(-3)
P 		699.7
(-0.4)
P 		886.5
(3)
P 		753.2
(0.6)
P 		889.3
(3)
P 		337
C 481.1
(-2.1)
P 		786.1
(1.2)
P 		396.2
(-3)
P 		930
(2.8)
P 		551.5
(-1.3)
P 		947.9
(3)
P 		552
avr 639.9
(-2.1) 		630.8
(-2.3) 		607.4
(-3) 		757.8
(1.3) 		697.2
(-0.4) 		818.4
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 211
(3)
P 		111.9
(-3)
P 		118
(-2.6)
P 		148.7
(-0.8)
P 		99
B 211.9
(3)
P 		86.4
(-3)
P 		108.2
(-2)
P 		188.6
(1.9)
P 		126
C 200.8
(3)
P 		131.2
(-3)
P 		159.9
(-0.5)
P 		186.5
(1.8)
P 		70
avr 207.9
(3) 		109.8
(-3) 		128.7
(-1.8) 		174.6
(1) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 156.4
(-1)
P 		197
(1)
P 		158.2
(-0.9)
P 		115.9
(-3)
P 		237.4
(3)
P 		150.5
(-1.3)
P 		122
B 205.4
(-1.7)
P 		183.8
(-2.5)
P 		169.9
(-3)
P 		234.8
(-0.6)
P 		306
(2.1)
P 		331.6
(3)
P 		162
C 178.3
(-0.9)
P 		239.9
(0.9)
P 		100.8
(-3)
P 		187
(-0.6)
P 		178.4
(-0.8)
P 		317.3
(3)
P 		217
avr 180
(-1.2) 		206.9
(0.1) 		143
(-3) 		179.2
(-1.2) 		240.6
(1.7) 		266.5
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9349
Sequence Type Exemplar sequence
Representative Public ID C39E9.11 NCBI
Target Description C39E9.11 /REP_DB=WormBase Gene ID /WP=CE20559 /TR=Q18535 /GB=CAA94340.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070114 NCBI Caenorhabditis elegans C39E9.11 (C39E9.11) mRNA, complete cds. 11/11 None
SNAP00000026310 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13091267:13093726:-1 11/11 None
GENEFINDER00000026319 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13091267:13093726:-1 11/11 None
C39E9.11 ENSEMBL cdna:known chromosome:CEL140:IV:13091212:13093802:-1 gene:C39E9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13091272-13093732(-) 97.87 100.0
Public Domain and Genome References
Gene Title
Ensembl C39E9.11
Entrez Gene 178257 Entrez gene
SwissProt Q18535 EMBL-EBI
WormBase CE20559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94340 Hypothetical protein C39E9.11 [Caenorhabditis elegans] ref|NP_502515.1| C39E9.11 [Caenorhabditis elegans] 1.0E-167
blast CAE58660 Hypothetical protein CBG01829 [Caenorhabditis briggsae] 1.0E-118
blast CAA94340 Hypothetical protein C39E9.11 [Caenorhabditis elegans] ref|NP_502515.1| C39E9.11 [Caenorhabditis elegans] 3.0E-98
blast CAE58660 Hypothetical protein CBG01829 [Caenorhabditis briggsae] 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:180605_S_AT
tccagctccaaaactgccagacgacagtgatgacgatgatgacggtccaaccgatttctt
cggtttctcatctgctccaactagaaaagaatcagaaattccatcagaaattccatatat
gacaatgaacagcagcatggatgtagttgggccatcccgtccagatgaaggaatggatcc
tcgacaaatgtatgaaatgccagaagaagaagaagatgttcaagaaggtccatctgcttc
aaatgcctggcttcatcggaagatcaatgacgagcaagctcataagcttttgatgcgatt
ctctcatgatattggacaagaagaacgtcgttcgatcaacgaaatggccaattcaattgt
cgatgtgaatgtggatgatgctctcggaccggatgttaagacaaatattatcaagaatct
tggacatcgcgcatttgttgaagcaacttctgctccattgccacaagttcaaactcaagg
acaaatgtcgagaagaaagcatcaaattacgtatttggccagcttggcagtatcccgcga
ggagcagctcaaagatcaatgggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGCTCCAAAACTGCCAGACGAC 380 589 618 Antisense
GATGACGGTCCAACCGATTTCTTCG 387 411 655 Antisense
TGGATGTAGTTGGGCCATCCCGTCC 91 549 755 Antisense
GTCCATCTGCTTCAAATGCCTGGCT 366 477 845 Antisense
GCTTTTGATGCGATTCTCTCATGAT 378 305 903 Antisense
GGATGATGCTCTCGGACCGGATGTT 366 513 990 Antisense
AAGAATCTTGGACATCGCGCATTTG 566 151 1030 Antisense
GTTGAAGCAACTTCTGCTCCATTGC 293 439 1054 Antisense
GCTCCATTGCCACAAGTTCAAACTC 99 299 1069 Antisense
ATTTGGCCAGCTTGGCAGTATCCCG 553 17 1130 Antisense
GAGCAGCTCAAAGATCAATGGGCCG 141 389 1159 Antisense
Sequence Source Affymetrix Proprietary Database