[Home] | [Total List]

[180604_at]

Description ZC132.4 /REP_DB=WormBase Gene ID /WP=CE15042 /TR=O17516 /GB=AAB63927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 54.4
(-2.5)
A 		53.7
(-2.5)
A 		47.1
(-3)
A 		128.2
(3)
M 		81
B 58.6
(-3)
A 		75.3
(3)
A 		61.3
(-2)
A 		70
(1.1)
A 		17
C 22.3
(-3)
A 		60
(0.5)
A 		34.3
(-1.9)
A 		87.7
(3)
P 		65
avr 45.1
(-3) 		63
(-0.9) 		47.6
(-2.7) 		95.3
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 9
(-3)
A 		37.1
(-0.4)
A 		36.4
(-0.5)
A 		55.7
(1.3)
A 		60.1
(1.7)
A 		74.9
(3)
A 		66
B 43.7
(0.2)
A 		37.2
(-0.3)
A 		4.4
(-3)
A 		77.1
(3)
A 		46.8
(0.5)
P 		39.3
(-0.1)
P 		73
C 39.4
(-0.3)
A 		8.2
(-2.8)
A 		6.2
(-3)
A 		79
(3)
A 		61.4
(1.5)
A 		57.8
(1.3)
P 		73
avr 30.7
(-1.4) 		27.5
(-1.7) 		15.7
(-3) 		70.6
(3) 		56.1
(1.4) 		57.3
(1.5) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 19.8
(3)
A 		11.7
(-3)
A 		12.3
(-2.6)
A 		18.8
(2.3)
M 		8
B 18.7
(3)
A 		18.6
(2.9)
A 		14.2
(-3)
A 		14.9
(-2.1)
A 		5
C 7.4
(-3)
A 		17.2
(3)
A 		12
(-0.2)
A 		14.8
(1.5)
P 		10
avr 15.3
(1.4) 		15.8
(2.3) 		12.8
(-3) 		16.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.7
(-3)
A 		13.2
(1.2)
A 		7.9
(-0.7)
A 		14.1
(1.5)
A 		18.1
(3)
A 		18.2
(3)
A 		17
B 15.2
(1.4)
A 		12.4
(0.5)
A 		1.1
(-3)
A 		20.4
(3)
A 		19
(2.6)
P 		14.6
(1.2)
P 		19
C 14.6
(1.3)
A 		2.5
(-2.7)
A 		1.6
(-3)
A 		15.9
(1.7)
A 		19.9
(3)
A 		19.3
(2.8)
P 		18
avr 10.5
(-0.3) 		9.4
(-0.7) 		3.5
(-3) 		16.8
(2.1) 		19
(3) 		17.4
(2.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15406
Sequence Type Exemplar sequence
Representative Public ID ZC132.4 NCBI
Target Description ZC132.4 /REP_DB=WormBase Gene ID /WP=CE15042 /TR=O17516 /GB=AAB63927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071785 NCBI Caenorhabditis elegans ZC132.4 (ZC132.4) mRNA, complete cds. 11/11 None
SNAP00000042301 ENSEMBL cdna:SNAP chromosome:CEL140:V:4301107:4310201:-1 11/11 None
GENEFINDER00000042308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4301107:4308325:-1 11/11 None
ZC132.4 ENSEMBL cdna:known chromosome:CEL140:V:4301107:4304208:-1 gene:ZC132.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017971 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017977 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZC132.4
Entrez Gene 191080 Entrez gene
SwissProt O17516 EMBL-EBI
WormBase CE15042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63927 Hypothetical protein ZC132.4 [Caenorhabditis elegans] ref|NP_504186.1| ZC132.4 [Caenorhabditis elegans] 0.0
blast AAB63932 Hypothetical protein ZC132.5 [Caenorhabditis elegans] ref|NP_504187.1| ZC132.5 [Caenorhabditis elegans] 0.0
blast AAB63928 Hypothetical protein ZC132.6 [Caenorhabditis elegans] ref|NP_504188.2| ZC132.6 [Caenorhabditis elegans] 1.0E-146
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 1.0E-109
blast CAB54375 Hypothetical protein Y105C5B.27 [Caenorhabditis elegans] ref|NP_502916.1| Y105C5B.27 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.9E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.9E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042301 1 2438-2460
GENEFINDER00000042308 1 1740-1762
Sequence
Target Sequence 
>C. ELEGANS:180604_AT
ggagatgcgatcttcaattcgccttatcctggaaactctctccaaaagagaccttcacaa
tccgcaaaagcagaacgaagcgatctccatggaagtgatcaatcacgaagaatcagaacg
tcttccaagaactgatctctgtcagttcaatcttcggaattataaaattccgaagatcaa
agagcccgaaactcttcaaaaaagtggatcacaaccactcaaagccaagggagaaaatct
gtcaaaacagattccaaagattcccaaacaagggaacaaaatgctgttcaaagcaaagtt
ccacagaagctttacggttgcagacgaaccgaaaagcccatcatgtgcttattgcaccag
aaaacacctgtctgacagatgtgggatcatcaaagatccgaaagcccgaaaagctcacct
ggagaacaacaatcgatgtctgctctgcctcaagaagaaagaagaactccacgagttcca
gaagaagagatgtcactactgtcacaggacaaatcaccactcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATGCGATCTTCAATTCGCCTT 214 517 1947 Antisense
AATTCGCCTTATCCTGGAAACTCTC 27 177 1962 Antisense
AAAAGAGACCTTCACAATCCGCAAA 15 129 1990 Antisense
GAACGAAGCGATCTCCATGGAAGTG 291 347 2019 Antisense
ACGTCTTCCAAGAACTGATCTCTGT 195 95 2064 Antisense
GATCTCTGTCAGTTCAATCTTCGGA 244 419 2080 Antisense
GATCACAACCACTCAAAGCCAAGGG 410 421 2153 Antisense
AGACGAACCGAAAAGCCCATCATGT 368 71 2268 Antisense
AAAGCCCGAAAAGCTCACCTGGAGA 208 125 2347 Antisense
AACAACAATCGATGTCTGCTCTGCC 199 135 2371 Antisense
TCACAGGACAAATCACCACTCATCT 179 629 2448 Antisense
Sequence Source Affymetrix Proprietary Database