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[180603_at]

Description F49F1.8 /REP_DB=WormBase Gene ID /WP=CE17091 /TR=Q9GZE1 /GB=AAF99964.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(-1.8)
A 		14.6
(3)
A 		4.7
(-3)
A 		6.9
(-1.7)
A 		10
B 7.4
(3)
A 		6.5
(1.3)
A 		4.3
(-3)
A 		5.7
(-0.3)
A 		3
C 5
(-1.8)
A 		7
(1.5)
A 		4.3
(-3)
A 		7.9
(3)
A 		4
avr 6.3
(-0.7) 		9.4
(3) 		4.4
(-3) 		6.8
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.4
(-1.3)
A 		3.4
(-2.4)
A 		2.8
(-3)
A 		8.5
(3)
A 		6.4
(0.8)
A 		6
B 4.8
(-1.1)
A 		2.3
(-3)
A 		10.4
(3)
A 		3
(-2.5)
A 		3.2
(-2.3)
A 		3.1
(-2.4)
A 		8
C 32.5
(3)
A 		6.9
(-2.2)
A 		2.8
(-3)
A 		4.2
(-2.7)
A 		2.9
(-3)
A 		4
(-2.8)
A 		30
avr 13.4
(3) 		4.5
(-2.3) 		5.5
(-1.7) 		3.3
(-3) 		4.9
(-2) 		4.5
(-2.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.4
(0.8)
A 		3.2
(3)
A 		1.2
(-2.5)
A 		1
(-3)
A 		2
B 2.3
(3)
A 		1.6
(-0.2)
A 		1
(-3)
A 		1.2
(-2.1)
A 		1
C 1.6
(-0.4)
A 		2
(3)
A 		1.5
(-1.3)
A 		1.3
(-3)
A 		1
avr 2.1
(1.9) 		2.3
(3) 		1.2
(-3) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.6
(0.1)
A 		0.7
(-2.4)
A 		0.7
(-2.4)
A 		2.6
(3)
A 		1.6
(0.1)
A 		2
B 1.7
(0.2)
A 		0.8
(-3)
A 		2.5
(3)
A 		0.8
(-3)
A 		1.3
(-1.2)
A 		1.2
(-1.6)
A 		2
C 12
(3)
A 		2.1
(-2.3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		0.9
(-2.9)
A 		1.3
(-2.7)
A 		11
avr 4.7
(3) 		1.5
(-1.9) 		1.3
(-2.2) 		0.8
(-3) 		1.6
(-1.8) 		1.4
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11051
Sequence Type Exemplar sequence
Representative Public ID F49F1.8 NCBI
Target Description F49F1.8 /REP_DB=WormBase Gene ID /WP=CE17091 /TR=Q9GZE1 /GB=AAF99964.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068088
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034587 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4128875:4129975:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034602 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4128880-4134630(-) 72.23 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02594 Hypothetical protein F58H7.6 [Caenorhabditis elegans] ref|NP_500013.1| F58H7.6 [Caenorhabditis elegans] 2.0E-26
blast CAA20985 Hypothetical protein Y38H6C.5 [Caenorhabditis elegans] ref|NP_507948.1| Y38H6C.5 [Caenorhabditis elegans] 2.0E-22
blast CAB05245 Hypothetical protein K03D3.8 [Caenorhabditis elegans] ref|NP_502939.1| K03D3.8 [Caenorhabditis elegans] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR005162 EMBL-EBI Retrotransposon gag protein 4.1E-20
Sequence
Target Sequence 
>C. ELEGANS:180603_AT
ggtggctcaggcaaatcaaggctcatcagaaatgatgggttcgcaggtatcggaaaacag
tgattctgatactaatgcggctccgttgtcagtagcggttgataaaaagagaagtggttc
cgtggggaacgctaagaaatcgtcttatgaggatagaccaatcattgggatgcttcgttt
gaggccagctgttcagttgacgccttataaagggacaatggcggaagacttttcgtcatt
catcagatctttcaaagatcagtgtgaagcaagcgagaagctgacagatgatcagcgact
caaatttttcctcacttgcctcttggacagagcaaggaacgtggctgaggacgagataaa
gctgaatgctgcagttactttggagcagctgattgcgcggatgcgtacgacgttcgagaa
tccggtgctgatcaaacacaaggagaatcaacttcgactttgcaagcagaaacctgaaga
atcggttgaagccttccatcttcggatcgaagagcttgaaagagctgcaagcacagttga
aaatatcgtgtggacgaagagaattgccctcgctcctgacgcaattcctcacgcagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCTCAGGCAAATCAAGGCTCA 488 499 2511 Antisense
TAATGCGGCTCCGTTGTCAGTAGCG 17 635 2583 Antisense
TTGGGATGCTTCGTTTGAGGCCAGC 170 707 2675 Antisense
GAGGCCAGCTGTTCAGTTGACGCCT 308 401 2691 Antisense
GACTTTTCGTCATTCATCAGATCTT 140 373 2737 Antisense
TCAGCGACTCAAATTTTTCCTCACT 110 625 2802 Antisense
GATTGCGCGGATGCGTACGACGTTC 137 435 2901 Antisense
TACGACGTTCGAGAATCCGGTGCTG 546 625 2916 Antisense
GAATCGGTTGAAGCCTTCCATCTTC 228 329 2989 Antisense
TGGACGAAGAGAATTGCCCTCGCTC 383 547 3061 Antisense
TCCTGACGCAATTCCTCACGCAGGA 484 593 3084 Antisense
Sequence Source Affymetrix Proprietary Database