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[180602_at]

Description T20D4.7 /REP_DB=WormBase Gene ID /WP=CE13792 /TR=P91468 /GB=AAB37590.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 49      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 8.9
(-2.4)
A 		51.2
(2.5)
A 		55.7
(3)
A 		4.1
(-3)
A 		52
B 6.6
(-3)
A 		62.7
(3)
A 		55.1
(2.2)
P 		45.4
(1.1)
A 		56
C 10.3
(-3)
A 		68.9
(1.9)
P 		82.7
(3)
P 		26.5
(-1.7)
M 		72
avr 8.6
(-3) 		60.9
(2.6) 		64.5
(3) 		25.3
(-1.2) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56.1
(3)
A 		21.2
(-3)
P 		29.7
(-1.5)
A 		25.2
(-2.3)
A 		46.7
(1.4)
A 		35.3
(-0.6)
A 		35
B 46.5
(3)
P 		31.2
(0.9)
A 		11.3
(-1.8)
A 		2.6
(-3)
A 		6.5
(-2.5)
A 		36.2
(1.6)
A 		44
C 28
(2.3)
A 		29.6
(2.7)
P 		17.4
(0)
A 		4.8
(-2.7)
A 		3.5
(-3)
A 		31.1
(3)
A 		28
avr 43.5
(3) 		27.3
(0) 		19.5
(-1.4) 		10.9
(-3) 		18.9
(-1.5) 		34.2
(1.3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 3.2
(-1.9)
A 		11.1
(1.5)
A 		14.6
(3)
A 		0.6
(-3)
A 		14
B 2.1
(-3)
A 		15.5
(3)
A 		12.8
(1.8)
P 		9.7
(0.4)
A 		13
C 3.4
(-3)
A 		19.8
(0.9)
P 		28.8
(3)
P 		4.5
(-2.7)
M 		25
avr 2.9
(-3) 		15.5
(1.8) 		18.7
(3) 		4.9
(-2.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.3
(0)
A 		7.6
(-2.1)
P 		6.5
(-2.9)
A 		6.4
(-3)
A 		14.1
(3)
A 		8.6
(-1.3)
A 		8
B 16.2
(3)
P 		10.4
(0.8)
A 		2.8
(-2.2)
A 		0.7
(-3)
A 		2.6
(-2.3)
A 		13.5
(2)
A 		16
C 10.4
(3)
A 		9
(2.1)
P 		4.4
(-0.8)
A 		1
(-3)
A 		1.1
(-2.9)
A 		10.4
(3)
A 		9
avr 12.3
(3) 		9
(0.9) 		4.6
(-1.8) 		2.7
(-3) 		5.9
(-1) 		10.8
(2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15265
Sequence Type Exemplar sequence
Representative Public ID T20D4.7 NCBI
Target Description T20D4.7 /REP_DB=WormBase Gene ID /WP=CE13792 /TR=P91468 /GB=AAB37590.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071553 NCBI Caenorhabditis elegans T20D4.7 (T20D4.7) mRNA, complete cds. 11/11 None
SNAP00000008849 ENSEMBL cdna:SNAP chromosome:CEL140:V:3408738:3409251:1 9/11 None
GENEFINDER00000008867 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3405290:3409251:1 10/11 None
T20D4.7 ENSEMBL cdna:known chromosome:CEL140:V:3408696:3409251:1 gene:T20D4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3408695-3409251(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D4.7
Entrez Gene 188643 Entrez gene
SwissProt P91468 EMBL-EBI
WormBase CE13792 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37589 Hypothetical protein T20D4.8 [Caenorhabditis elegans] ref|NP_503953.1| T20D4.8 [Caenorhabditis elegans] 0.0
blast AAF59425 Hypothetical protein Y19D10B.6 [Caenorhabditis elegans] ref|NP_503636.1| Y19D10B.6 [Caenorhabditis elegans] 0.0
blast NP_503898 T28A11.17 [Caenorhabditis elegans] gb|AAC48126.2| Hypothetical protein T28A11.17 [Caenorhabditis elegans] 0.0
blast AAB37590 Hypothetical protein T20D4.7 [Caenorhabditis elegans] ref|NP_503954.1| T20D4.7 [Caenorhabditis elegans] 1.0E-78
blast AAB37590 Hypothetical protein T20D4.7 [Caenorhabditis elegans] ref|NP_503954.1| T20D4.7 [Caenorhabditis elegans] 8.0E-70
blast AAU20849 Hypothetical protein C32D5.8b [Caenorhabditis elegans] ref|NP_001022004.1| C32D5.8b [Caenorhabditis elegans] 2.0E-56
blast AAC46796 Hypothetical protein C32D5.8a [Caenorhabditis elegans] ref|NP_001022003.1| C32D5.8a [Caenorhabditis elegans] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 5.2E-84
Sequence
Target Sequence 
>C. ELEGANS:180602_AT
ttcagctaatttacacatttccagagaaaaacatggacattttggctggaatgaaacttg
aaaaacttgacaagtcgttggtcgacgcaactgaagctcttgcaggaaaactcgtcggat
tctacttctcagctcattggtgtccaccatgccgcggcttcacaccgattcttaaggatt
tctacgaggaggttaatgaagagttcgagatcgtcttcgtctcttccgatcgtagcgaga
gtgacctgaaaatgtatatgaaagagtgtcacggtgactggtatcatattccgcatggaa
atggcgccaaacagaagctttccactaaatacggagtttctggaatcccagcccttatca
tcgtcaagccagacggtactgaaataaccagggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCTAATTTACACATTTCCAGA 25 687 23 Antisense
GAAAAACATGGACATTTTGGCTGGA 395 353 48 Antisense
GCAGGAAAACTCGTCGGATTCTACT 376 311 124 Antisense
CGGCTTCACACCGATTCTTAAGGAT 200 243 177 Antisense
GATTCTTAAGGATTTCTACGAGGAG 556 429 189 Antisense
GGTGACTGGTATCATATTCCGCATG 261 501 295 Antisense
ATTCCGCATGGAAATGGCGCCAAAC 517 5 310 Antisense
TGGCGCCAAACAGAAGCTTTCCACT 646 539 324 Antisense
GAAGCTTTCCACTAAATACGGAGTT 182 343 336 Antisense
ACGGAGTTTCTGGAATCCCAGCCCT 15 97 353 Antisense
GACGGTACTGAAATAACCAGGGATG 228 375 394 Antisense
Sequence Source Affymetrix Proprietary Database