[Home] | [Total List]

[180601_s_at]

Description F54B11.6 /REP_DB=WormBase Gene ID /WP=CE05930 /TR=Q20741 /GB=CAA94138.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 71      6grp_total > 36      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 35      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 446.3
(-0.4)
P 		224.9
(-3)
P 		220.8
(-3)
P 		736.3
(3)
P 		516
B 439.6
(-0.3)
P 		350.9
(-1.5)
P 		245.7
(-3)
P 		671.9
(3)
P 		426
C 446
(0)
P 		260.9
(-2.5)
P 		220.7
(-3)
P 		665
(3)
P 		444
avr 444
(-0.2) 		278.9
(-2.4) 		229.1
(-3) 		691.1
(3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 348
(3)
P 		337.7
(2.6)
P 		303.6
(1.3)
P 		335.5
(2.5)
P 		190.1
(-3)
P 		289.5
(0.8)
P 		158
B 377.5
(2)
P 		376.5
(2)
P 		408.1
(3)
P 		219.6
(-3)
P 		243.8
(-2.2)
P 		329.4
(0.5)
P 		189
C 435
(3)
P 		369.3
(1.4)
P 		288.9
(-0.6)
P 		340.5
(0.7)
P 		188.2
(-3)
P 		432.8
(2.9)
P 		247
avr 386.8
(3) 		361.2
(2.1) 		333.5
(1.2) 		298.5
(0) 		207.4
(-3) 		350.6
(1.8) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 162.5
(3)
P 		48.8
(-3)
P 		57.7
(-2.5)
P 		107.8
(0.1)
P 		114
B 140.2
(2.8)
P 		86.7
(-0.9)
P 		56.9
(-3)
P 		143.2
(3)
P 		86
C 147.6
(3)
P 		75
(-3)
P 		76.9
(-2.8)
P 		112.1
(0.1)
P 		73
avr 150.1
(3) 		70.2
(-2.6) 		63.8
(-3) 		121
(1) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 64.2
(-2.3)
P 		120.1
(3)
P 		66.1
(-2.2)
P 		85.1
(-0.3)
P 		57.4
(-3)
P 		70.5
(-1.7)
P 		63
B 131.4
(3)
P 		125.3
(2.5)
P 		99.1
(0.4)
P 		58.2
(-3)
P 		99.1
(0.4)
P 		122.8
(2.3)
P 		73
C 161.2
(3)
P 		112.7
(0.1)
P 		73.5
(-2.2)
P 		68.5
(-2.5)
P 		60.9
(-3)
P 		144.9
(2)
P 		100
avr 118.9
(2.9) 		119.4
(3) 		79.6
(-1.9) 		70.6
(-3) 		72.5
(-2.8) 		112.7
(2.2) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180601_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17642
Sequence Type Exemplar sequence
Representative Public ID F54B11.6 NCBI
Target Description F54B11.6 /REP_DB=WormBase Gene ID /WP=CE05930 /TR=Q20741 /GB=CAA94138.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077876 NCBI Caenorhabditis elegans BMP receptor Associated protein family member (bra-1) (bra-1) mRNA, complete cds. 11/11 None
SNAP00000008291 ENSEMBL cdna:SNAP chromosome:CEL140:X:13598390:13599310:1 11/11 None
GENEFINDER00000008303 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13598390:13601608:1 11/11 None
F54B11.6 ENSEMBL cdna:known chromosome:CEL140:X:13598390:13599594:1 gene:F54B11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13598389-13599310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bra-1
Ensembl F54B11.6
Entrez Gene 181481 Entrez gene
SwissProt Q20741 EMBL-EBI
WormBase CE05930 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603905_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE:1597425_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE:1585580_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE_2:CFA.13075.1.A1_S_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE_2:CFA.21595.1.S1_S_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE_2:CFA.4247.1.A1_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CANINE_2:CFAAFFX.9458.1.S1_S_AT similar to Zinc finger MYND domain containing protein 11 (Adenovirus 5 E1A-binding protein) (BS69 protein) cfa
CHICKEN:GGA.10687.1.S1_AT zinc finger, MYND domain containing 11 gga
CHICKEN:GGA.11911.2.S1_A_AT zinc finger, MYND domain containing 11 gga
CHICKEN:GGAAFFX.21984.1.S1_AT zinc finger, MYND domain containing 11 gga
HG-U95AV2:33864_AT zinc finger, MYND domain containing 11 hs
HG-U133_PLUS_2:202137_S_AT zinc finger, MYND domain containing 11 hs
HG-U133A:202137_S_AT zinc finger, MYND domain containing 11 hs
HG-U133A_2:202137_S_AT zinc finger, MYND domain containing 11 hs
HU35KSUBD:RC_AA478799_S_AT zinc finger, MYND domain containing 11 hs
HUGENEFL:X86098_AT zinc finger, MYND domain containing 11 hs
U133_X3P:G5729745_3P_A_AT zinc finger, MYND domain containing 11 hs
U133_X3P:HS2.301449.2.S1_3P_AT zinc finger, MYND domain containing 11 hs
U133_X3P:HS.301449.0.S2_3P_AT zinc finger, MYND domain containing 11 hs
HG-U133_PLUS_2:1554158_AT zinc finger, MYND domain containing 11 hs
HG-U133_PLUS_2:1554159_A_AT zinc finger, MYND domain containing 11 hs
HG-U133A_2:202136_AT zinc finger, MYND domain containing 11 hs
HG-FOCUS:202136_AT zinc finger, MYND domain containing 11 hs
HG-U133_PLUS_2:202136_AT zinc finger, MYND domain containing 11 hs
HG-U133A:202136_AT zinc finger, MYND domain containing 11 hs
HG-U95AV2:33865_AT zinc finger, MYND domain containing 11 hs
HG-U95C:55606_F_AT zinc finger, MYND domain containing 11 hs
HG-U95E:78671_F_AT zinc finger, MYND domain containing 11 hs
HG-U95D:80044_AT zinc finger, MYND domain containing 11 hs
HG-U133_PLUS_2:243054_AT Zinc finger, MYND domain containing 11 hs
HG-U133B:243054_AT Zinc finger, MYND domain containing 11 hs
HG-U95D:91314_AT Zinc finger, MYND domain containing 11 hs
U133_X3P:HS.255096.0.A1_3P_AT Zinc finger, MYND domain containing 11 hs
MOE430A:1436153_A_AT zinc finger, MYND domain containing 11 mm
MOUSE430A_2:1436153_A_AT zinc finger, MYND domain containing 11 mm
MOUSE430_2:1436153_A_AT zinc finger, MYND domain containing 11 mm
MG-U74AV2:97484_AT zinc finger, MYND domain containing 11 mm
MG-U74BV2:110239_AT zinc finger, MYND domain containing 11 mm
MG-U74BV2:110241_AT zinc finger, MYND domain containing 11 mm
MG-U74BV2:110240_G_AT zinc finger, MYND domain containing 11 mm
MOE430A:1426531_AT zinc finger, MYND domain containing 11 mm
MOUSE430A_2:1426531_AT zinc finger, MYND domain containing 11 mm
MOUSE430_2:1426531_AT zinc finger, MYND domain containing 11 mm
MOE430A:1426532_AT zinc finger, MYND domain containing 11 mm
MOUSE430A_2:1426532_AT zinc finger, MYND domain containing 11 mm
MOUSE430_2:1426532_AT zinc finger, MYND domain containing 11 mm
MOE430B:1446182_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MOUSE430_2:1446182_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MOE430B:1444461_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MOUSE430_2:1444461_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MU19KSUBA:TC16220_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MU19KSUBC:TC37294_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MU19KSUBC:TC38924_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
MU19KSUBC:TC39427_AT Zinc finger, MYND domain containing 11 (Zmynd11), mRNA mm
RG-U34B:RC_AA900991_AT BS69 protein rn
RAE230A:1372068_AT BS69 protein rn
RAT230_2:1372068_AT BS69 protein rn
RAE230B:1397302_AT BS69 protein rn
RAT230_2:1397302_AT BS69 protein rn
RAE230B:1392154_AT BS69 protein rn
RAT230_2:1392154_AT BS69 protein rn
RAE230B:1392846_AT BS69 protein rn
RAT230_2:1392846_AT BS69 protein rn
RG-U34B:RC_AA944574_AT BS69 protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30424 axon inferred from direct assay QuickGO AmiGO
30425 dendrite inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5102 receptor binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94138 Hypothetical protein F54B11.6 [Caenorhabditis elegans] ref|NP_510277.1| BMP receptor Associated protein family member (bra-1) [Caenorhabditis elegans] 1.0E-107
blast CAA94138 Hypothetical protein F54B11.6 [Caenorhabditis elegans] ref|NP_510277.1| BMP receptor Associated protein family member (bra-1) [Caenorhabditis elegans] 1.0E-104
blast CAA94139 Hypothetical protein F54B11.7 [Caenorhabditis elegans] ref|NP_510278.1| F54B11.7 [Caenorhabditis elegans] 8.0E-94
blast CAE69140 Hypothetical protein CBG15170 [Caenorhabditis briggsae] 2.0E-60
blast AAC71131 Hypothetical protein F23H11.1 [Caenorhabditis elegans] ref|NP_497292.1| BMP receptor Associated protein family member (bra-2) [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 2.8E-16
Sequence
Target Sequence 
>C. ELEGANS:180601_S_AT
agaagctgaagctggaccatcgccaaaagttaatggggaaaatggaaacggaacaaatac
gttcgacgacttgtacgtggatgacaaaatgcgtcgaatgattgtcgaccttcagcgtca
atggctcacggattatcacgatagccgcgagaaatctctcgttgctctaactgaaaaact
ccatcaagaattcatggaagatcaggagcgagtccgtcgcgatttgttggttcagttcaa
gatagagctcgaccagacaaaggaagagctggagaagaagcacgcggagaatctcaagga
ggagattgaaaagctgtcggaaaaacaccaaagggaacttgctgtcgctaagaagaagca
gtggtgctggcaatgcaacagcgaggcaatctatcattgctgctggaacactgcttattg
cagcgttgaatgccaacaaggacactggcagattcatcgcaagttctgccgcagaaagaa
gagcaacggtggagccccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCTGAAGCTGGACCATCGCCA 72 75 21 Antisense
GAATGATTGTCGACCTTCAGCGTCA 35 331 116 Antisense
GCGTCAATGGCTCACGGATTATCAC 48 291 135 Antisense
TCACGATAGCCGCGAGAAATCTCTC 379 625 156 Antisense
GAAATCTCTCGTTGCTCTAACTGAA 20 363 171 Antisense
GATCAGGAGCGAGTCCGTCGCGATT 706 419 220 Antisense
CGTCGCGATTTGTTGGTTCAGTTCA 539 245 235 Antisense
ACACCAAAGGGAACTTGCTGTCGCT 483 109 345 Antisense
ATCATTGCTGCTGGAACACTGCTTA 328 31 413 Antisense
AGGACACTGGCAGATTCATCGCAAG 689 53 459 Antisense
AAGAAGAGCAACGGTGGAGCCCCAG 612 151 496 Antisense
Sequence Source Affymetrix Proprietary Database