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[180600_at]

Description ZC132.3 /REP_DB=WormBase Gene ID /WP=CE15040 /TR=O17515 /GB=AAB63926.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 98
(0.6)
P 		87.4
(-0.5)
A 		65
(-3)
A 		119.4
(3)
A 		54
B 135.1
(3)
P 		23.7
(-3)
A 		62.5
(-0.9)
A 		114.1
(1.9)
A 		111
C 117.7
(3)
P 		13.8
(-3)
A 		39.8
(-1.5)
A 		107.3
(2.4)
A 		104
avr 116.9
(3) 		41.6
(-3) 		55.8
(-1.9) 		113.6
(2.7) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 132
(3)
A 		80
(-1.4)
A 		101.1
(0.4)
A 		61.8
(-3)
A 		70.8
(-2.2)
A 		89.8
(-0.6)
A 		70
B 153.6
(3)
A 		106.8
(0.3)
A 		48.9
(-3)
A 		79.9
(-1.2)
A 		75.9
(-1.5)
A 		90.1
(-0.6)
A 		105
C 113.1
(3)
P 		91.8
(1.3)
A 		86.3
(0.8)
A 		66.1
(-0.8)
A 		39.3
(-3)
A 		71.3
(-0.4)
A 		74
avr 132.9
(3) 		92.9
(-0.4) 		78.8
(-1.6) 		69.3
(-2.4) 		62
(-3) 		83.7
(-1.2) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 35.7
(3)
P 		19
(-2.4)
A 		17
(-3)
A 		17.5
(-2.8)
A 		19
B 43.1
(3)
P 		5.9
(-3)
A 		14.5
(-1.6)
A 		24.3
(-0)
A 		37
C 38.9
(3)
P 		4
(-3)
A 		13.9
(-1.3)
A 		18.1
(-0.6)
A 		35
avr 39.2
(3) 		9.6
(-3) 		15.1
(-1.9) 		20
(-0.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 24.3
(1)
A 		28.5
(3)
A 		22
(-0)
A 		15.7
(-3)
A 		21.4
(-0.3)
A 		21.9
(-0.1)
A 		13
B 53.5
(3)
A 		35.5
(0.4)
A 		11.9
(-3)
A 		21.2
(-1.7)
A 		30.8
(-0.3)
A 		33.6
(0.1)
A 		42
C 41.9
(3)
P 		28
(0.1)
A 		22
(-1.1)
A 		13.3
(-2.9)
A 		12.7
(-3)
A 		23.9
(-0.7)
A 		29
avr 39.9
(3) 		30.7
(0.6) 		18.6
(-2.5) 		16.7
(-3) 		21.6
(-1.7) 		26.5
(-0.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15060
Sequence Type Exemplar sequence
Representative Public ID ZC132.3 NCBI
Target Description ZC132.3 /REP_DB=WormBase Gene ID /WP=CE15040 /TR=O17515 /GB=AAB63926.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029125 NCBI Caenorhabditis elegans ZC132.3a (ZC132.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042310 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4296587:4299478:-1 11/11 None
ZC132.3 ENSEMBL cdna:known chromosome:CEL140:V:4296558:4299644:-1 gene:ZC132.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029126 6/11 Cross Hyb Matching Probes None
SNAP00000042299 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178827 2 1 NM_001029125 180600_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4296586-4299631(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC132.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63926 Hypothetical protein ZC132.3a [Caenorhabditis elegans] ref|NP_001024296.1| ZC132.3a [Caenorhabditis elegans] 0.0
blast NP_001024297 ZC132.3b [Caenorhabditis elegans] 0.0
blast ABA00177 Hypothetical protein ZC132.3b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024296.1 13 32-54,84-106,121-140,161-180,190-212,232-254,307-329,359-381,396-415,436-455,465-487,508-530,535-557
ZC132.3 13 32-54,84-106,121-140,161-180,190-212,232-254,307-329,359-381,396-415,436-455,465-487,508-530,535-557
GENEFINDER00000042310 11 46-68,81-103,113-135,156-178,188-210,290-312,355-377,390-412,422-444,470-492,496-518
Sequence
Target Sequence 
>C. ELEGANS:180600_AT
gggacaatctttgactactactgtggaatctatcttttctgtcagcttttcctatgtgtc
gctggcctttcccagcttccgatcatgtgtgaaaaatctataattgaactgacacaccac
gaaaaacaaatttactcccaaacttttgcaatcgcaattttgaaattggttctcctcttc
tgcctattcgttgccggaaacttcataaattatgagattatcatctcaatgtttgtgacg
tccgatttattcttggtcccatcgatggttctcatattcgaagtgttctgtcgtcctaag
catgtcgagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACAATCTTTGACTACTACTGTG 320 495 1405 Antisense
CTATCTTTTCTGTCAGCTTTTCCTA 526 223 1434 Antisense
TCAGCTTTTCCTATGTGTCGCTGGC 297 625 1446 Antisense
TCCCAGCTTCCGATCATGTGTGAAA 99 599 1474 Antisense
ACTCCCAAACTTTTGCAATCGCAAT 159 99 1538 Antisense
TGCCTATTCGTTGCCGGAAACTTCA 512 583 1585 Antisense
ATCTCAATGTTTGTGACGTCCGATT 400 31 1627 Antisense
GACGTCCGATTTATTCTTGGTCCCA 671 377 1641 Antisense
CTTGGTCCCATCGATGGTTCTCATA 582 215 1656 Antisense
TTCGAAGTGTTCTGTCGTCCTAAGC 329 687 1681 Antisense
GTCGTCCTAAGCATGTCGAGTTTCA 336 471 1694 Antisense
Sequence Source Affymetrix Proprietary Database