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[180599_at]

Description C46H3.1 /REP_DB=WormBase Gene ID /WP=CE04221 /TR=Q18661 /GB=AAA82443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 49
(-0.7)
A
75.6
(3)
A
39.6
(-2)
A
32.2
(-3)
A
43
B 49.4
(-1.7)
A
69.7
(3)
A
66.6
(2.3)
M
44
(-3)
A
26
C 56.9
(3)
P
38.1
(0.8)
A
6.9
(-3)
A
6.7
(-3)
A
50
avr 51.8
(1.3)
61.1
(3)
37.7
(-1.2)
27.6
(-3)
34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 79.7
(3)
A
45.1
(-1)
A
50.6
(-0.4)
A
47.9
(-0.7)
A
28.2
(-3)
A
43.8
(-1.2)
A
52
B 61.5
(2.8)
A
40.8
(0.6)
A
6.3
(-3)
A
51.5
(1.7)
A
63.8
(3)
A
24.4
(-1.1)
A
58
C 58.1
(0.1)
A
70.5
(1.4)
A
59.6
(0.2)
A
85.9
(3)
A
28.6
(-3)
A
45.2
(-1.3)
A
57
avr 66.4
(3)
52.1
(0)
38.8
(-2.8)
61.8
(2)
40.2
(-2.5)
37.8
(-3)
29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.8
(3)
A
16.4
(2.4)
A
10.3
(-0.4)
A
4.7
(-3)
A
13
B 15.7
(1.8)
A
17.2
(3)
A
15.4
(1.6)
M
9.4
(-3)
A
8
C 18.8
(3)
P
11
(0.4)
A
2.4
(-2.6)
A
1.1
(-3)
A
18
avr 17.4
(3)
14.9
(1.8)
9.4
(-0.9)
5.1
(-3)
12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 14.7
(2)
A
16
(3)
A
11
(-1)
A
12.2
(-0)
A
8.5
(-3)
A
10.7
(-1.2)
A
8
B 21.4
(1.9)
A
13.6
(-0)
A
1.5
(-3)
A
13.6
(-0)
A
25.9
(3)
A
9.1
(-1.1)
A
24
C 21.5
(3)
A
21.5
(3)
A
15.2
(-0.1)
A
17.3
(1)
A
9.2
(-3)
A
15.1
(-0.1)
A
12
avr 19.2
(3)
17
(1.7)
9.2
(-3)
14.4
(0.1)
14.5
(0.2)
11.6
(-1.6)
10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18393
Sequence Type Exemplar sequence
Representative Public ID C46H3.1 NCBI
Target Description C46H3.1 /REP_DB=WormBase Gene ID /WP=CE04221 /TR=Q18661 /GB=AAA82443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075827(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075827 NCBI Caenorhabditis elegans C46H3.1 (C46H3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034193 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1209406:1210678:1 11/11 None
SNAP00000034185 ENSEMBL cdna:SNAP chromosome:CEL140:X:1210163:1210678:1 9/11 None
C46H3.1 ENSEMBL cdna:known chromosome:CEL140:X:1209406:1210678:1 gene:C46H3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034184 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1209405-1210678(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H3.1
Entrez Gene 183519 Entrez gene
SwissProt Q18661 EMBL-EBI
WormBase CE04221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82443 Hypothetical protein C46H3.1 [Caenorhabditis elegans] ref|NP_508228.1| C46H3.1 [Caenorhabditis elegans] 1.0E-106
blast AAA82443 Hypothetical protein C46H3.1 [Caenorhabditis elegans] ref|NP_508228.1| C46H3.1 [Caenorhabditis elegans] 2.0E-69
Sequence
Target Sequence
>C. ELEGANS:180599_AT
gacaaccatatccgaatcttcactcctcgttaagaccagatttaatgagaaatcctcaac
cctatggcacaatgagatcaccacaaccaactatggggcccgtcccaccttacggtcagc
ctttgaacaactctgtgtttggtagttcacagtttccactgccaccaatgccagttccaa
acctggtaaacgtgcagaatgatctagcgtttaataactacatccgacatctctcccaac
agctgaacgcttcaatcccaggattgcctggagtcgctccattacagctaccagtgccac
caggacctttcaactttcctgcactacaccaacagttgggagcaccaaacaacatttttc
agagacctacgtttccaactcaagaagagtataatttatgttttcttccgtacactcctg
aacgctacgaagcac


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GACAACCATATCCGAATCTTCACTC 82 365 167 Antisense
TTCACTCCTCGTTAAGACCAGATTT 206 687 185 Antisense
CACCACAACCAACTATGGGGCCCGT 298 201 245 Antisense
CACCTTACGGTCAGCCTTTGAACAA 15 1 272 Antisense
TGGTAGTTCACAGTTTCCACTGCCA 33 553 306 Antisense
TAATAACTACATCCGACATCTCTCC 632 635 378 Antisense
TCTCCCAACAGCTGAACGCTTCAAT 476 609 398 Antisense
AGGATTGCCTGGAGTCGCTCCATTA 464 57 426 Antisense
CCAGGACCTTTCAACTTTCCTGCAC 59 273 466 Antisense
TTTTCAGAGACCTACGTTTCCAACT 504 675 522 Antisense
TACACTCCTGAACGCTACGAAGCAC 81 641 577 Antisense
Sequence Source Affymetrix Proprietary Database