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[180598_s_at]

Description C35E7.2 /REP_DB=WormBase Gene ID /WP=CE17515 /TR=O61774 /GB=AAC17518.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 715.4
(3)
P 		453
(-1.3)
P 		345.6
(-3)
P 		380
(-2.4)
P 		370
B 853.1
(3)
P 		387.4
(-1.8)
P 		266.7
(-3)
P 		346
(-2.2)
P 		586
C 720.5
(3)
P 		356
(-2.2)
P 		331.5
(-2.6)
P 		300.1
(-3)
P 		420
avr 763
(3) 		398.8
(-1.9) 		314.6
(-3) 		342
(-2.6) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 624.2
(2.9)
P 		631.5
(3)
P 		330
(-1.3)
P 		421.1
(-0)
P 		309
(-1.6)
P 		211.8
(-3)
P 		420
B 564.6
(3)
P 		490.4
(1.9)
P 		357.9
(-0.1)
P 		444
(1.2)
P 		246.7
(-1.8)
P 		167.3
(-3)
P 		397
C 650.1
(3)
P 		486
(0.8)
P 		540.6
(1.6)
P 		363.8
(-0.8)
P 		279.1
(-1.9)
P 		196.3
(-3)
P 		454
avr 613
(3) 		536
(1.9) 		409.5
(0.1) 		409.6
(0.1) 		278.3
(-1.8) 		191.8
(-3) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 260.5
(3)
P 		98.3
(-1.7)
P 		90.4
(-2)
P 		55.6
(-3)
P 		205
B 272.1
(3)
P 		95.7
(-2)
P 		61.8
(-3)
P 		73.7
(-2.7)
P 		210
C 238.5
(3)
P 		102.3
(-1.3)
P 		115.5
(-0.9)
P 		50.6
(-3)
P 		188
avr 257
(3) 		98.8
(-1.8) 		89.2
(-2.1) 		60
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 115.1
(-0.8)
P 		224.6
(3)
P 		71.9
(-2.3)
P 		106.8
(-1.1)
P 		93.3
(-1.6)
P 		51.6
(-3)
P 		173
B 196.5
(3)
P 		163.2
(1.5)
P 		86.9
(-1.9)
P 		117.6
(-0.5)
P 		100.2
(-1.3)
P 		62.4
(-3)
P 		134
C 241
(3)
P 		148.3
(-0.2)
P 		137.6
(-0.5)
P 		73.2
(-2.7)
P 		90.3
(-2.2)
P 		65.7
(-3)
P 		175
avr 184.2
(3) 		178.7
(2.7) 		98.8
(-1.1) 		99.2
(-1.1) 		94.6
(-1.3) 		59.9
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180598_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2189
Sequence Type Exemplar sequence
Representative Public ID C35E7.2 NCBI
Target Description C35E7.2 /REP_DB=WormBase Gene ID /WP=CE17515 /TR=O61774 /GB=AAC17518.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060432(11), NM_060433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060432 NCBI Caenorhabditis elegans C35E7.2a (C35E7.2) mRNA, complete cds. 11/11 None
NM_060433 NCBI Caenorhabditis elegans C35E7.2b (C35E7.2) mRNA, complete cds. 11/11 None
SNAP00000013376 ENSEMBL cdna:SNAP chromosome:CEL140:I:10849242:10852501:1 11/11 None
GENEFINDER00000013385 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10849242:10852501:1 11/11 None
C35E7.2a ENSEMBL cdna:known chromosome:CEL140:I:10849235:10852768:1 gene:C35E7.2 11/11 None
C35E7.2b ENSEMBL cdna:known chromosome:CEL140:I:10850299:10852501:1 gene:C35E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10849172-10852432(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35E7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02458 Hypothetical protein C35E7.2a [Caenorhabditis elegans] ref|NP_492833.1| C35E7.2a [Caenorhabditis elegans] 0.0
blast T33077 hypothetical protein C35E7.2 - Caenorhabditis elegans 0.0
blast AAL02459 Hypothetical protein C35E7.2b [Caenorhabditis elegans] ref|NP_492834.1| C35E7.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180598_S_AT
gcccaacctcattatgttccagtggaatatttcaatcacacgatatcagacttgcttaga
caaatatcaggtctgcagcatgagcaagctatgcaaaatggacaaatgcagcatatggcc
aatgaaattcgaagcattggaaatgcagtttgcagtctacactcatcacaactacaacag
ccgcctaacagtgccgcaagcatgtttccgtacccgattcatccgatgccttcaaccttt
ccacagcaagcacctcatgctccaaatgctcctcaaatgacagccaactcaatgcaaagc
atcgcagagctcatactcgcgcaaagaggaatcgcaccaagaagagaaagacgtctcaca
gaaggtcctaaaaagtataacagagtgatcccaccttcaccccgaattccaagttcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAACCTCATTATGTTCCAGTGG 154 287 1450 Antisense
AATCACACGATATCAGACTTGCTTA 83 171 1483 Antisense
TCAGGTCTGCAGCATGAGCAAGCTA 685 621 1516 Antisense
GTTTGCAGTCTACACTCATCACAAC 525 451 1597 Antisense
TAACAGTGCCGCAAGCATGTTTCCG 678 639 1635 Antisense
TGCTCCAAATGCTCCTCAAATGACA 112 583 1707 Antisense
GACAGCCAACTCAATGCAAAGCATC 6 369 1728 Antisense
ATCGCAGAGCTCATACTCGCGCAAA 379 37 1750 Antisense
GAAAGACGTCTCACAGAAGGTCCTA 208 359 1795 Antisense
ATAACAGAGTGATCCCACCTTCACC 259 25 1826 Antisense
TTCACCCCGAATTCCAAGTTCAACT 655 685 1845 Antisense
Sequence Source Affymetrix Proprietary Database