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[180597_at]

Description F40E10.6 /REP_DB=WormBase Gene ID /WP=CE18674 /TR=Q19985 /GB=CAA93669.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 20      6grp_total > 06      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 1359.1
(2.2)
P 		1085.4
(-1.4)
P 		965.1
(-3)
P 		1418.7
(3)
P 		454
B 1402.2
(1.9)
P 		1067.7
(-2.6)
P 		1041.4
(-3)
P 		1487
(3)
P 		446
C 1248.2
(3)
P 		1197.2
(1.4)
P 		1060.5
(-3)
P 		1241.1
(2.8)
P 		188
avr 1336.5
(2.2) 		1116.8
(-1.4) 		1022.3
(-3) 		1382.3
(3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 783
1 2 3 4 5 6 range
A 1308.2
(2.4)
P 		1270.3
(1.9)
P 		843
(-3)
P 		903.8
(-2.3)
P 		1364.5
(3)
P 		928.6
(-2)
P 		522
B 1488.5
(3)
P 		1270.7
(0.5)
P 		974.2
(-3)
P 		1086.6
(-1.7)
P 		1029.9
(-2.4)
P 		979.4
(-2.9)
P 		514
C 1626.2
(3)
P 		1270.4
(-0.1)
P 		942
(-3)
P 		1121
(-1.4)
P 		1158.2
(-1.1)
P 		964.6
(-2.8)
P 		684
avr 1474.3
(3) 		1270.5
(0.8) 		919.7
(-3) 		1037.1
(-1.7) 		1184.2
(-0.1) 		957.5
(-2.6) 		555
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 494.9
(3)
P 		235.6
(-2.4)
P 		252.3
(-2.1)
P 		207.7
(-3)
P 		287
B 447.1
(3)
P 		263.7
(-2.3)
P 		241.3
(-3)
P 		316.9
(-0.8)
P 		206
C 413.2
(3)
P 		344.2
(1)
P 		369.6
(1.7)
P 		209.3
(-3)
P 		204
avr 451.7
(3) 		281.2
(-1.9) 		287.7
(-1.8) 		244.6
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 241.2
(-1.7)
P 		451.8
(3)
P 		183.6
(-3)
P 		229.2
(-2)
P 		411.7
(2.1)
P 		226.1
(-2)
P 		268
B 517.9
(3)
P 		423
(1)
P 		236.6
(-3)
P 		287.8
(-1.9)
P 		418.5
(0.9)
P 		365.2
(-0.3)
P 		281
C 602.8
(3)
P 		387.6
(-0.4)
P 		239.8
(-2.8)
P 		225.4
(-3)
P 		374.8
(-0.6)
P 		322.9
(-1.4)
P 		377
avr 454
(3) 		420.8
(2.1) 		220
(-3) 		247.5
(-2.3) 		401.7
(1.7) 		304.7
(-0.8) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17609
Sequence Type Exemplar sequence
Representative Public ID F40E10.6 NCBI
Target Description F40E10.6 /REP_DB=WormBase Gene ID /WP=CE18674 /TR=Q19985 /GB=CAA93669.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078041 NCBI Caenorhabditis elegans F40E10.6 (F40E10.6) mRNA, complete cds. 11/11 None
F40E10.6.2 ENSEMBL cdna:known chromosome:CEL140:X:14703633:14706775:-1 gene:F40E10.6 11/11 None
F40E10.6.1 ENSEMBL cdna:known chromosome:CEL140:X:14703651:14706775:-1 gene:F40E10.6 11/11 None
F40E10.6.3 ENSEMBL cdna:known chromosome:CEL140:X:14703656:14706775:-1 gene:F40E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14704108-14708379(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40E10.6
Entrez Gene 181565 Entrez gene
SwissProt Q19985 EMBL-EBI
WormBase CE31508 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258737_AT expressed protein at
CANINE_2:CFA.21227.1.S1_S_AT similar to Putative MAP kinase-activating protein C22orf5 cfa
CANINE_2:CFAAFFX.3019.1.S1_AT similar to Putative MAP kinase-activating protein C22orf5 cfa
DROSOPHILA_2:1632844_S_AT dm
DROSGENOME1:151742_AT dm
DROSGENOME1:142992_AT dm
CHICKEN:GGA.15708.1.S1_AT similar to Putative MAP kinase activating protein C22orf5 gga
CHICKEN:GGA.15708.2.S1_A_AT similar to Putative MAP kinase activating protein C22orf5 gga
CHICKEN:GGAAFFX.23854.1.S1_AT similar to Putative MAP kinase activating protein C22orf5 gga
CHICKEN:GGAAFFX.23854.1.S1_S_AT similar to Putative MAP kinase activating protein C22orf5 gga
CHICKEN:GGAAFFX.7775.1.S1_AT similar to Putative MAP kinase activating protein C22orf5 gga
HG-U133_PLUS_2:202027_AT chromosome 22 open reading frame 5 hs
HG-U133A:202027_AT chromosome 22 open reading frame 5 hs
HG-U133A_2:202027_AT chromosome 22 open reading frame 5 hs
HU35KSUBA:RC_AA233548_AT chromosome 22 open reading frame 5 hs
U133_X3P:G7110634_3P_AT chromosome 22 open reading frame 5 hs
HG-U95AV2:41758_AT chromosome 22 open reading frame 5 hs
HG-U95E:86181_AT Chromosome 22 open reading frame 5 hs
MG-U74BV2:108541_AT RIKEN cDNA 4732495E13 gene mm
MOE430A:1427059_AT RIKEN cDNA 4732495E13 gene mm
MOUSE430A_2:1427059_AT RIKEN cDNA 4732495E13 gene mm
MOUSE430_2:1427059_AT RIKEN cDNA 4732495E13 gene mm
MU19KSUBA:TC23541_AT RIKEN cDNA 4732495E13 gene mm
MU19KSUBA:TC24130_AT RIKEN cDNA 4732495E13 gene, mRNA (cDNA clone IMAGE:5066061) mm
RAE230B:1392518_AT Similar to Protein C22orf5 (predicted) rn
RAT230_2:1392518_AT Similar to Protein C22orf5 (predicted) rn
RG-U34B:RC_AA955564_AT Similar to Protein C22orf5 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA93669 Hypothetical protein F40E10.6 [Caenorhabditis elegans] emb|CAA93657.2| Hypothetical protein F40E10.6 [Caenorhabditis elegans] ref|NP_510442.2| F40E10.6 [Caenorhabditis elegans] 0.0
blast CAE63218 Hypothetical protein CBG07576 [Caenorhabditis briggsae] 0.0
blast AAN11491 CG12004-PB, isoform B [Drosophila melanogaster] gb|AAF47516.2| CG12004-PA, isoform A [Drosophila melanogaster] ref|NP_728633.1| CG12004-PB, isoform B [Drosophila melanogaster] ref|NP_647627.1| CG12004-PA, isoform A [Drosophila melanogaster] gb|AAK93509.1| SD03655p [Drosophila melanogaster] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR005178 EMBL-EBI Protein of unknown function 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510442.2 6 19-36,51-73,151-168,183-205,226-245,265-287
F40E10.6.2 6 19-36,51-73,151-168,183-205,226-245,265-287
F40E10.6.1 6 19-36,51-73,151-168,183-205,226-245,265-287
F40E10.6.3 6 19-36,51-73,151-168,183-205,226-245,265-287
Sequence
Target Sequence 
>C. ELEGANS:180597_AT
gttcctgttttatgcagcaactcgcgaccttctcagcccatatcgcccggttctcaagtt
cttgactgtcaagagtgtcatcttcttgtctttctggcagggattcctcattgctattct
cggagccacttctgcgatcgacccgatttacgatgccgaaggaagagaagtgatcggacg
tggaacagtcgccgctggatggcaaaacttcttcatttgcattgaaatgttcttcgccgc
aattgctcttcgtttcgctttcaatgtttccgcctacgccgatgcccacaacgctagcaa
cgccaacgatggccgcccagtcaccctccaatcgatcagctcatctctcaaggaaaccat
gaatcccaaagatattatgcaggatgcgattcacaatttccaccctcaataccaacaata
cactcaacactccaacgctcaacgaccgcaacaacccgggactagcaccagcactgaaga
acaacgaatgtcgaagggtggtgccgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCTGTTTTATGCAGCAACTCGC 579 441 1203 Antisense
AAGAGTGTCATCTTCTTGTCTTTCT 347 155 1273 Antisense
TGTCTTTCTGGCAGGGATTCCTCAT 43 559 1289 Antisense
GATTCCTCATTGCTATTCTCGGAGC 426 431 1304 Antisense
GCGATCGACCCGATTTACGATGCCG 224 285 1336 Antisense
TGGAACAGTCGCCGCTGGATGGCAA 237 547 1383 Antisense
TGCATTGAAATGTTCTTCGCCGCAA 275 579 1420 Antisense
AACGCTAGCAACGCCAACGATGGCC 546 145 1492 Antisense
GATCAGCTCATCTCTCAAGGAAACC 286 421 1536 Antisense
GGATGCGATTCACAATTTCCACCCT 491 513 1584 Antisense
GAATGTCGAAGGGTGGTGCCGCAAC 554 331 1688 Antisense
Sequence Source Affymetrix Proprietary Database