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[180596_at]

Description K12D9.8 /REP_DB=WormBase Gene ID /WP=CE12194 /TR=P91383 /GB=AAG24165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 09      6grp_cgc > 65      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 5.9
(-3)
A 		44.5
(-0.9)
A 		44.8
(-0.9)
A 		117.7
(3)
A 		112
B 53.7
(-0.7)
A 		35
(-3)
A 		55.5
(-0.5)
A 		83.6
(3)
A 		49
C 31
(-2.3)
A 		23.3
(-3)
A 		27.5
(-2.6)
A 		88.6
(3)
P 		65
avr 30.2
(-3) 		34.3
(-2.6) 		42.6
(-1.9) 		96.6
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 16.6
(-2.1)
A 		6.4
(-2.9)
A 		48
(0.3)
A 		4.6
(-3)
A 		83.7
(3)
A 		27.2
(-1.3)
A 		79
B 26
(0.8)
A 		33.6
(2.2)
A 		36.9
(2.8)
A 		4.5
(-3)
A 		9.5
(-2.1)
A 		38.2
(3)
A 		34
C 10.4
(-3)
A 		63.7
(3)
A 		51.8
(1.7)
A 		56.2
(2.2)
A 		30.6
(-0.7)
A 		30.3
(-0.8)
M 		53
avr 17.7
(-3) 		34.6
(0.6) 		45.6
(3) 		21.8
(-2.1) 		41.3
(2.1) 		31.9
(0.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.1
(-3)
A 		9.7
(0)
A 		11.7
(0.8)
A 		17.2
(3)
A 		15
B 17.1
(2.5)
A 		8.6
(-3)
A 		12.8
(-0.3)
A 		17.8
(3)
A 		9
C 10.2
(-0.4)
A 		6.7
(-3)
A 		9.6
(-0.9)
A 		14.9
(3)
P 		8
avr 9.8
(-1.9) 		8.3
(-3) 		11.4
(-0.8) 		16.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.1
(-2.5)
A 		2.3
(-2.7)
A 		10.4
(-0.7)
A 		1.2
(-3)
A 		25.2
(3)
A 		6.6
(-1.7)
A 		24
B 9
(0.6)
A 		11.2
(1.6)
A 		9
(0.6)
A 		1.2
(-3)
A 		3.9
(-1.8)
A 		14.2
(3)
A 		13
C 3.8
(-3)
A 		19.4
(3)
A 		13.2
(0.6)
A 		11.3
(-0.1)
A 		9.9
(-0.7)
A 		10.1
(-0.6)
M 		16
avr 5.3
(-2.5) 		11
(1.6) 		10.9
(1.5) 		4.6
(-3) 		13
(3) 		10.3
(1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15040
Sequence Type Exemplar sequence
Representative Public ID K12D9.8 NCBI
Target Description K12D9.8 /REP_DB=WormBase Gene ID /WP=CE12194 /TR=P91383 /GB=AAG24165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2994726:3007950:-1 10/11 None
K12D9.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3000253:3001843:-1 gene:K12D9.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3000252-3001852(-) 100.0 100.0
Public Domain and Genome References
Ensembl K12D9.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 0.0
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-172
blast T25822 hypothetical protein K12D9.8 - Caenorhabditis elegans 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022490 27 36-58,65-84,89-107,134-156,176-198,271-293,298-320,332-349,364-386,399-421,431-448,472-494,509-531,710-727,775-797,823-845,860-882,922-944,954-976,983-1005,1015-1032,1045-1067,1110-1132,1318-1335,1383-1405,1429-1451,1466-1488
Sequence
Target Sequence 
>C. ELEGANS:180596_AT
agtttgcgcagcaagtcttccaatttcaacaattaaatcttttgaatttttaattgctaa
aggaccgttcctaaatatatgtgctggaaagatattttattatttacttaccgagggtcc
cctcttcatggctaataatttactgtttgggaaatatttctacattttcaattcactggt
gtcagatgttattcctagtctgctgctcccaatcgttacctgcttacttttgcagggaat
aaggagagccggtaagatcagagcaagaacaagcccctcaggtcagaatagttattggaa
aactactggattagtgttctgtgtaactttcatgtttttccttgttgaatttccttatgg
actcagtataggattccaatgggttttaaatgatgtctacggcgtaaaaaatattctaag
ctattgcggatatatgtttccagtgttcatcaccggcaacagttgcactcatctcgtagt
ttgttttttgatgtcctccgattatcggagcactgctatttctgttttctcgtgtgtgta
tttcaatcaggaaagaaggcatgcgcaaagggttcaggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTGCGCAGCAAGTCTTCCAATT 405 63 540 Antisense
GGACCGTTCCTAAATATATGTGCTG 307 523 601 Antisense
GTCCCCTCTTCATGGCTAATAATTT 416 475 656 Antisense
CTGGTGTCAGATGTTATTCCTAGTC 106 239 715 Antisense
CCAATCGTTACCTGCTTACTTTTGC 603 275 748 Antisense
AGAACAAGCCCCTCAGGTCAGAATA 73 73 805 Antisense
TGTTTCCAGTGTTCATCACCGGCAA 500 561 974 Antisense
GTTGCACTCATCTCGTAGTTTGTTT 315 439 1001 Antisense
AGTTTGTTTTTTGATGTCCTCCGAT 201 61 1017 Antisense
GGAGCACTGCTATTTCTGTTTTCTC 247 521 1046 Antisense
GGCATGCGCAAAGGGTTCAGGTCAA 421 535 1097 Antisense
Sequence Source Affymetrix Proprietary Database