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[180595_s_at]

Description F27B3.5 /REP_DB=WormBase Gene ID /WP=CE28010 /TR=Q9N5V0 /GB=AAF39793.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 81      6grp_total > 66      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 276.2
(3)
P 		147.3
(-3)
P 		188.7
(-1.1)
P 		175.8
(-1.7)
P 		129
B 332.1
(3)
P 		204.4
(-2.2)
P 		185.1
(-3)
P 		220.9
(-1.5)
P 		147
C 355.3
(3)
P 		164.3
(-3)
P 		213.6
(-1.5)
P 		247.1
(-0.4)
P 		191
avr 321.2
(3) 		172
(-3) 		195.8
(-2) 		214.6
(-1.3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 193.4
(-3)
P 		220
(-1.6)
P 		310.8
(3)
P 		277
(1.3)
P 		207.4
(-2.3)
P 		295.5
(2.2)
P 		117
B 267.1
(-0.9)
P 		229.2
(-3)
P 		239.3
(-2.4)
P 		290.9
(0.4)
P 		238.9
(-2.5)
P 		336.9
(3)
P 		108
C 258
(-1.1)
P 		273.5
(-0.4)
P 		208.8
(-3)
P 		243.7
(-1.6)
P 		224.2
(-2.4)
P 		361
(3)
P 		152
avr 239.5
(-2.1) 		240.9
(-2) 		253
(-1.4) 		270.5
(-0.4) 		223.5
(-3) 		331.1
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 100.6
(3)
P 		32
(-2.5)
P 		49.3
(-1.1)
P 		25.7
(-3)
P 		75
B 105.9
(3)
P 		50.5
(-2.3)
P 		42.9
(-3)
P 		47.1
(-2.6)
P 		63
C 117.6
(3)
P 		47.2
(-2.6)
P 		74.4
(-0.4)
P 		41.7
(-3)
P 		76
avr 108
(3) 		43.2
(-2.6) 		55.5
(-1.5) 		38.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 35.6
(-3)
P 		78.2
(3)
P 		67.7
(1.5)
P 		70.2
(1.9)
P 		62.6
(0.8)
P 		71.9
(2.1)
P 		43
B 92.9
(0.1)
P 		76.3
(-1.4)
P 		58.1
(-3)
P 		77.1
(-1.3)
P 		97.1
(0.5)
P 		125.6
(3)
P 		68
C 95.6
(0.9)
P 		83.5
(-0.1)
P 		53.1
(-2.7)
P 		49
(-3)
P 		72.5
(-1)
P 		120.8
(3)
P 		72
avr 74.7
(-1.1) 		79.3
(-0.5) 		59.6
(-3) 		65.4
(-2.3) 		77.4
(-0.7) 		106.1
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180595_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6598
Sequence Type Exemplar sequence
Representative Public ID F27B3.5 NCBI
Target Description F27B3.5 /REP_DB=WormBase Gene ID /WP=CE28010 /TR=Q9N5V0 /GB=AAF39793.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066045(11), NM_066047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066045 NCBI Caenorhabditis elegans C09E7.7 (C09E7.7) mRNA, complete cds. 11/11 None
NM_066047 NCBI Caenorhabditis elegans F27B3.5 (F27B3.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042853 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6541573:6551164:-1 11/11 None
SNAP00000042849 ENSEMBL cdna:SNAP chromosome:CEL140:III:6546845:6551164:-1 11/11 None
SNAP00000034654 ENSEMBL cdna:SNAP chromosome:CEL140:III:6559370:6563594:-1 11/11 None
GENEFINDER00000034663 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6559370:6563594:-1 11/11 None
C09E7.7 ENSEMBL cdna:known chromosome:CEL140:III:6546677:6551164:-1 gene:C09E7.7 11/11 None
F27B3.5 ENSEMBL cdna:known chromosome:CEL140:III:6559034:6562830:-1 gene:F27B3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6559368-6563593(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C09E7.7
F27B3.5
Entrez Gene 175930 Entrez gene
3564963 Entrez gene
SwissProt Q9N5Y7 EMBL-EBI
Q9N5V0 EMBL-EBI
WormBase CE25771 Wormbase
CE28010 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60368 Hypothetical protein C09E7.7 [Caenorhabditis elegans] ref|NP_498446.1| C09E7.7 [Caenorhabditis elegans] 0.0
blast AAF39793 Hypothetical protein F27B3.5 [Caenorhabditis elegans] ref|NP_498448.1| F27B3.5 [Caenorhabditis elegans] 0.0
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Sequence
Target Sequence 
>C. ELEGANS:180595_S_AT
gaacgggagatagcctatggactgcaggaagaagcttctaaactgagagttggaacaggc
aaggatgtgaagagacagatcttagagtcggaaaatgcccaacttcgtcaagaaaaacag
agacgtgaaatggagaagtcaagtctccttgaaacaaagatgatactatctcgtcaaaat
gaagaacaacataaattaattcaaagtcttatggatcaaaatcatacagaagaagggcca
tcgaatcatgaagatgagaatggaagttatagaaaagtactttggaaacatcagaagatc
aaggatttgtatagaaaaggagaacagcagagagaagctgaagagatggtcaataaattg
atttcgttgaatcagcatccagaagtacaacatatatcatttctggagctcgaaagtttt
aagaagcagatcagtgactatctacacactgtcgagaagaacattcaaaagatcaaaagg
aatgatgactttacgaatcttgaaccacttccagaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGGAGATAGCCTATGGACTGC 107 347 2269 Antisense
TATGGACTGCAGGAAGAAGCTTCTA 63 655 2284 Antisense
GAGTCGGAAAATGCCCAACTTCGTC 486 397 2353 Antisense
GATGATACTATCTCGTCAAAATGAA 697 409 2427 Antisense
GAAGAAGGGCCATCGAATCATGAAG 513 339 2497 Antisense
GAATCAGCATCCAGAAGTACAACAT 25 329 2637 Antisense
ACAACATATATCATTTCTGGAGCTC 333 113 2655 Antisense
GAAGCAGATCAGTGACTATCTACAC 454 341 2691 Antisense
GACTATCTACACACTGTCGAGAAGA 193 373 2704 Antisense
ATGACTTTACGAATCTTGAACCACT 196 43 2753 Antisense
GAATCTTGAACCACTTCCAGAACCA 192 327 2763 Antisense
Sequence Source Affymetrix Proprietary Database