[Home] | [Total List]

[180593_at]

Description T05C3.2 /REP_DB=WormBase Gene ID /WP=CE27437 /TR=O16302 /GB=AAK71396.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 59      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 77.6
(-0.2)
P 		95.8
(1.9)
P 		106
(3)
M 		52.6
(-3)
A 		53
B 113.5
(3)
P 		81.8
(-1.2)
A 		97.2
(0.8)
A 		68.2
(-3)
A 		45
C 54.8
(-3)
P 		81
(1)
P 		57.4
(-2.6)
P 		94
(3)
A 		39
avr 82
(1.1) 		86.2
(2.7) 		86.9
(3) 		71.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 99.1
(3)
M 		77
(1.5)
A 		61
(0.4)
A 		10.8
(-3)
A 		56.4
(0.1)
A 		48.9
(-0.4)
A 		88
B 67.6
(3)
P 		54.3
(1)
A 		33.9
(-2.1)
A 		31.2
(-2.5)
A 		61.6
(2.1)
M 		27.6
(-3)
A 		40
C 43.9
(-0.6)
A 		46.2
(-0.2)
A 		65.8
(2.9)
M 		34.1
(-2.1)
A 		28.5
(-3)
A 		66.3
(3)
P 		38
avr 70.2
(3) 		59.2
(1.5) 		53.6
(0.8) 		25.4
(-3) 		48.8
(0.1) 		47.6
(-0) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 28.3
(3)
P 		20.8
(0.8)
P 		27.7
(2.8)
M 		7.7
(-3)
A 		21
B 36.2
(3)
P 		20.2
(-1.4)
A 		22.5
(-0.8)
A 		14.5
(-3)
A 		22
C 18.2
(-1.1)
P 		23.3
(3)
P 		20
(0.4)
P 		15.8
(-3)
A 		8
avr 27.6
(3) 		21.4
(0.5) 		23.4
(1.3) 		12.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 18.3
(0.8)
M 		27.4
(3)
A 		13.3
(-0.4)
A 		2.7
(-3)
A 		17
(0.5)
A 		11.9
(-0.8)
A 		25
B 23.5
(2.5)
P 		18.1
(0.5)
A 		8.2
(-3)
A 		8.3
(-3)
A 		25
(3)
M 		10.3
(-2.3)
A 		17
C 16.3
(0.7)
A 		14.1
(-0.2)
A 		16.8
(0.9)
M 		6.9
(-3)
A 		9.2
(-2.1)
A 		22.2
(3)
P 		15
avr 19.4
(2.8) 		19.9
(3) 		12.8
(-0.1) 		6
(-3) 		17.1
(1.8) 		14.8
(0.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11605
Sequence Type Exemplar sequence
Representative Public ID T05C3.2 NCBI
Target Description T05C3.2 /REP_DB=WormBase Gene ID /WP=CE27437 /TR=O16302 /GB=AAK71396.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072050 NCBI Caenorhabditis elegans T05C3.2 (T05C3.2) mRNA, complete cds. 11/11 None
SNAP00000006789 ENSEMBL cdna:SNAP chromosome:CEL140:V:5490345:5502822:1 10/11 None
GENEFINDER00000006791 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5490274:5502822:1 10/11 None
T05C3.2 ENSEMBL cdna:known chromosome:CEL140:V:5493559:5502879:1 gene:T05C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5490344-5502879(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C3.2
Entrez Gene 188117 Entrez gene
SwissProt O16302 EMBL-EBI
WormBase CE27437 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591302_AT similar to T05C3.2 cfa
CANINE_2:CFAAFFX.24941.1.S1_S_AT similar to T05C3.2 cfa
CANINE_2:CFAAFFX.24944.1.S1_AT similar to T05C3.2 cfa
DROSOPHILA_2:1627074_AT dm
DROSGENOME1:149996_AT dm
CHICKEN:GGAAFFX.9095.1.S1_AT similar to g-protein beta WD-40 repeat (5F983) gga
CHICKEN:GGAAFFX.9096.1.S1_AT similar to g-protein beta WD-40 repeat (5F983) gga
HU35KSUBB:RC_T10248_AT KIAA1239 protein hs
U133_X3P:HS.4280.0.S1_3P_AT KIAA1239 protein hs
HG-U133_PLUS_2:230765_AT KIAA1239 protein hs
HG-U133B:230765_AT KIAA1239 protein hs
HG-U95B:53552_AT KIAA1239 protein hs
MG-U74CV2:138970_AT RIKEN cDNA 3110047P20 gene mm
MOE430B:1460482_AT RIKEN cDNA 3110047P20 gene mm
MOUSE430_2:1460482_AT RIKEN cDNA 3110047P20 gene mm
MOUSE430_2:1441025_AT RIKEN cDNA 3110047P20 gene, mRNA (cDNA clone IMAGE:6827189) mm
MOE430B:1441025_AT RIKEN cDNA 3110047P20 gene, mRNA (cDNA clone IMAGE:6827189) mm
MG-U74CV2:140352_AT RIKEN cDNA 3110047P20 gene, mRNA (cDNA clone IMAGE:6827189) mm
Protein Similarities
Method ID Description E-Value
blast NP_504451 T05C3.2 [Caenorhabditis elegans] gb|AAK71396.1| Hypothetical protein T05C3.2 [Caenorhabditis elegans] 0.0
blast T31733 hypothetical protein T05C3.2 - Caenorhabditis elegans 0.0
blast CAE64624 Hypothetical protein CBG09382 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007111 EMBL-EBI NACHT nucleoside triphosphatase 1.3E-47
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.41
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.2E-7
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.8E-8
Pfam IPR007111 EMBL-EBI NACHT nucleoside triphosphatase 1.3E-47
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.41
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-6
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.8E-8
Pfam IPR007111 EMBL-EBI NACHT nucleoside triphosphatase 1.3E-47
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.41
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006791 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180593_AT
agatcaagtttcggccgaggcagtcgaaaaagcagaaagacgtgatgattaataaaatta
ttgcgatgccatccaacagtaatcagataatagtcgtagaaagtgacaataaatcaagcg
tctgggatattcgagtcagaaaattccatcgatccctcactcaattcaacggagttgtgt
cgaatgacggaaaattgggattatttgcacctgcaaaaggcggtctttttgtaatcgata
tgcggagcggtcaagttgcaaaaactctaatcggaaatgtgacagaaggagtgaacgatg
ttacttgctcattttctccgaatgctcaatacgtgttctacaatcacagtgcacaagatg
gatcccttctcacagttgttctcaatgatccgatggtaaaagaagaaactctcaacaaaa
tcgcccttctcccttgtcgacgtcaccttgcagaatttcagcatattcatgttccagagg
aagccgaattggacacatttgatttgagaaatctgggagccgtcaccgccgcggttaccc
gcttcaaatctctattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCAAGTTTCGGCCGAGGCAGTC 204 65 6377 Antisense
GCGATGCCATCCAACAGTAATCAGA 473 289 6439 Antisense
GATCCCTCACTCAATTCAACGGAGT 396 415 6527 Antisense
CGATGTTACTTGCTCATTTTCTCCG 59 249 6672 Antisense
TTTCTCCGAATGCTCAATACGTGTT 517 669 6689 Antisense
TACGTGTTCTACAATCACAGTGCAC 523 647 6706 Antisense
AGTGCACAAGATGGATCCCTTCTCA 95 61 6724 Antisense
CCCTTCTCACAGTTGTTCTCAATGA 467 259 6740 Antisense
TCGACGTCACCTTGCAGAATTTCAG 624 599 6813 Antisense
TTGAGAAATCTGGGAGCCGTCACCG 144 707 6880 Antisense
TTACCCGCTTCAAATCTCTATTGGA 254 681 6911 Antisense
Sequence Source Affymetrix Proprietary Database