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[180592_s_at]

Description F56A4.2 /REP_DB=WormBase Gene ID /WP=CE17006 /TR=O44596 /GB=AAF39840.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 58      6grp_total > 29      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2373
1 2 3 4 range
A 2464.5
(3)
P 		1463
(0.5)
P 		2244
(2.4)
P 		92
(-3)
A 		2373
B 2420.8
(3)
P 		1624
(0.9)
P 		2084.4
(2.1)
P 		120.9
(-3)
P 		2300
C 2361.8
(3)
P 		1397.5
(0.4)
P 		1986.5
(2)
P 		94.8
(-3)
A 		2267
avr 2415.7
(3) 		1494.8
(0.6) 		2105
(2.2) 		102.6
(-3) 		2313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 125.7
(3)
P 		98.9
(1.2)
P 		36.9
(-3)
A 		46.8
(-2.3)
A 		81.7
(0)
A 		74.6
(-0.5)
A 		89
B 120.6
(3)
P 		120.7
(3)
P 		53.2
(-2.1)
A 		40.9
(-3)
A 		109.7
(2.2)
P 		59.9
(-1.6)
A 		80
C 105.5
(1.5)
P 		135.9
(3)
P 		37.8
(-2)
A 		22
(-2.7)
A 		103.3
(1.4)
P 		17
(-3)
A 		119
avr 117.3
(2.9) 		118.5
(3) 		42.6
(-2.6) 		36.6
(-3) 		98.2
(1.5) 		50.5
(-2) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 897.3
(3)
P 		317.6
(-0.9)
P 		586.6
(0.9)
P 		13.5
(-3)
A 		884
B 772
(3)
P 		401.1
(0)
P 		483
(0.7)
P 		25.8
(-3)
P 		746
C 781.8
(3)
P 		401.8
(0)
P 		692.4
(2.3)
P 		16
(-3)
A 		766
avr 817
(3) 		373.5
(-0.3) 		587.3
(1.3) 		18.4
(-3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.2
(0.4)
P 		35.2
(3)
P 		8
(-3)
A 		11.9
(-2.1)
A 		24.7
(0.7)
A 		18.2
(-0.8)
A 		27
B 41.9
(2.5)
P 		40.2
(2.2)
P 		12.9
(-2.6)
A 		10.8
(-3)
A 		44.6
(3)
P 		22.3
(-1)
A 		34
C 39.1
(2.6)
P 		41.5
(3)
P 		9.6
(-2.2)
A 		4.4
(-3)
A 		33.4
(1.7)
P 		5.7
(-2.8)
A 		37
avr 34.7
(2.1) 		39
(3) 		10.2
(-2.8) 		9
(-3) 		34.2
(2) 		15.4
(-1.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15031
Sequence Type Exemplar sequence
Representative Public ID F56A4.2 NCBI
Target Description F56A4.2 /REP_DB=WormBase Gene ID /WP=CE17006 /TR=O44596 /GB=AAF39840.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071249(11), NM_071275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071249 NCBI Caenorhabditis elegans Y19D10A.9 (Y19D10A.9) mRNA, complete cds. 11/11 None
NM_071275 NCBI Caenorhabditis elegans F56A4.2 (F56A4.2) mRNA, complete cds. 11/11 None
SNAP00000029965 ENSEMBL cdna:SNAP chromosome:CEL140:V:2351504:2354438:1 11/11 None
GENEFINDER00000029986 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2351504:2352760:1 11/11 None
SNAP00000032946 ENSEMBL cdna:SNAP chromosome:CEL140:V:2459465:2462399:1 11/11 None
GENEFINDER00000032962 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2459465:2460721:1 11/11 None
Y19D10A.9 ENSEMBL cdna:known chromosome:CEL140:V:2351504:2352760:1 gene:Y19D10A.9 11/11 None
F56A4.2 ENSEMBL cdna:known chromosome:CEL140:V:2459465:2460721:1 gene:F56A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2459464-2460721(+) 100.0 100.0
chrV:2351503-2352760(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.9
F56A4.2
Entrez Gene 178716 Entrez gene
178721 Entrez gene
SwissProt O44596 EMBL-EBI
WormBase CE17006 Wormbase
CE17006 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39840 Hypothetical protein F56A4.2 [Caenorhabditis elegans] ref|NP_503676.1| F56A4.2 [Caenorhabditis elegans] ref|NP_503650.1| Y19D10A.9 [Caenorhabditis elegans] gb|AAK68422.1| Hypothetical protein Y19D10A.9 [Caenorhabditis elegans] 1.0E-176
blast AAK68530 Hypothetical protein Y54G2A.6 [Caenorhabditis elegans] ref|NP_500262.1| Y54G2A.6 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.2E-7
Sequence
Target Sequence 
>C. ELEGANS:180592_S_AT
cacgagcttccttttgtatgcagttatgatccgaaaaactttactccaattccatctggt
tccgggtccacacctgatttcacaaatggcccagcttcgggagccactgacgagccgatc
tccgacgctaccggagcctattccactgacttgccattttctgattccccaactggagct
tccgatctaccattctttggatcttcgggagctactgatttcccagtctcgggtggtcca
tctgattcaccaatttatccagcttcgggagccactgacgagccgatctccgacgctacc
ggagtcgcaagttccgatggaccattggcctactccaccgacttgccattctccgattct
ccaactggagcttccgatatgccattttttggaacttctgactacccagtctcgggtggt
cca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGAGCTTCCTTTTGTATGCAGTT 621 199 406 Antisense
TTTACTCCAATTCCATCTGGTTCCG 428 673 445 Antisense
TCCACTGACTTGCCATTTTCTGATT 325 589 547 Antisense
CAACTGGAGCTTCCGATCTACCATT 11 189 575 Antisense
TACTGATTTCCCAGTCTCGGGTGGT 296 625 618 Antisense
CTCGGGTGGTCCATCTGATTCACCA 352 231 633 Antisense
GATTCACCAATTTATCCAGCTTCGG 519 429 649 Antisense
GGAGTCGCAAGTTCCGATGGACCAT 166 517 706 Antisense
CCATTCTCCGATTCTCCAACTGGAG 267 271 751 Antisense
GAGCTTCCGATATGCCATTTTTTGG 87 387 773 Antisense
TGACTACCCAGTCTCGGGTGGTCCA 67 567 804 Antisense
Sequence Source Affymetrix Proprietary Database