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[180591_at]

Description F09B12.4 /REP_DB=WormBase Gene ID /WP=CE17646 /TR=O62143 /GB=CAB05475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 83.2
(3)
A 		65.6
(-1.1)
A 		70.2
(-0)
A 		57.5
(-3)
A 		26
B 94
(3)
P 		32.7
(-3)
A 		83.1
(1.9)
A 		51.3
(-1.2)
A 		61
C 74
(0.1)
M 		48.1
(-3)
A 		84.6
(1.4)
A 		98.1
(3)
A 		50
avr 83.7
(3) 		48.8
(-3) 		79.3
(2.2) 		69
(0.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 6.9
(-3)
A 		49
(-0.3)
A 		48.1
(-0.3)
A 		67.5
(1)
A 		98.8
(3)
A 		66.4
(0.9)
A 		92
B 89.2
(3)
P 		85.8
(2.6)
A 		38.6
(-3)
A 		53.7
(-1.2)
A 		41.3
(-2.7)
A 		48.4
(-1.8)
A 		51
C 54.2
(-2.7)
A 		77.4
(1.5)
A 		85.8
(3)
A 		64.1
(-0.9)
A 		52.8
(-3)
A 		56.2
(-2.4)
A 		33
avr 50.1
(-3) 		70.7
(3) 		57.5
(-0.8) 		61.8
(0.4) 		64.3
(1.1) 		57
(-1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 30.3
(3)
A 		14.2
(-1.4)
A 		18.3
(-0.3)
A 		8.4
(-3)
A 		22
B 30
(3)
P 		8.1
(-3)
A 		19.3
(0.1)
A 		10.9
(-2.2)
A 		22
C 24.5
(1.1)
M 		13.8
(-3)
A 		29.5
(3)
A 		16.5
(-2)
A 		16
avr 28.3
(3) 		12
(-3) 		22.4
(0.8) 		11.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1.3
(-3)
A 		17.4
(0.4)
A 		10.5
(-1.1)
A 		17.1
(0.3)
A 		29.8
(3)
A 		16.2
(0.1)
A 		29
B 31
(3)
P 		28.5
(2.3)
A 		9.4
(-3)
A 		14.2
(-1.7)
A 		16.8
(-0.9)
A 		18.1
(-0.6)
A 		22
C 20.1
(1)
A 		23.6
(3)
A 		21.8
(2)
A 		12.9
(-3)
A 		17.1
(-0.6)
A 		18.8
(0.3)
A 		11
avr 17.5
(-0.7) 		23.2
(3) 		13.9
(-3) 		14.7
(-2.5) 		21.2
(1.7) 		17.7
(-0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17569
Sequence Type Exemplar sequence
Representative Public ID F09B12.4 NCBI
Target Description F09B12.4 /REP_DB=WormBase Gene ID /WP=CE17646 /TR=O62143 /GB=CAB05475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078113
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R07D5.2 ENSEMBL cdna:known chromosome:CEL140:X:15109867:15116526:-1 gene:R07D5.2 None
NM_078113 NCBI Caenorhabditis elegans R07D5.2 (R07D5.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15110036-15113033(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07D5.2
Entrez Gene 184224 Entrez gene
SwissProt Q21807 EMBL-EBI
WormBase CE37400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60780 Hypothetical protein R07D5.2 [Caenorhabditis elegans] emb|CAA94606.2| Hypothetical protein R07D5.2 [Caenorhabditis elegans] ref|NP_510514.2| R07D5.2 [Caenorhabditis elegans] 0.0
blast CAE63256 Hypothetical protein CBG07628 [Caenorhabditis briggsae] 0.0
blast T20628 hypothetical protein F09B12.4 - Caenorhabditis elegans 1.0E-164
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510514.2 7 346-368,380-402,451-473,486-508,566-588,617-639,654-676
R07D5.2 7 346-368,380-402,451-473,486-508,566-588,617-639,654-676
Sequence
Target Sequence 
>C. ELEGANS:180591_AT
gcaagaatactcgccttcatcgatcctgttatgaatccattgattgtaattctgcgaaca
cctgctctacgccgccaacttcggtcacagtggacaacgattcgatcccgtgcctcttcg
cgcacccgttcagctcatagtcatcgagagaacgccgacgctggtgtcaaacgcaaacgt
tcaagtgcacgcatgaaaaaagatgcggaactgatgatgtcgttgatgcccaccgatcga
ccggaagaccaacaaccgcaaatttgtggaatgtcctatagaacttgcgcgcactgtata
aaacccaaaataactaatatcgtgatggaacactcttggctatttttaatgttttcaatg
aaatgtatggaaatcaaaatcaaaattttgcgcattttcaaacattttcaaatattgaga
aataaacaattgtatgatatttaccaaattctcacaaaaattccagatcacttgcgtgca
cctgacccgatcctgctcgttgcgtcgaagccaagactcgcagacgcacaattccgttgt
ttgacaatcatgattgtagggcccattattttttgtgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGAATACTCGCCTTCATCGATC 318 321 730 Antisense
CGCCAACTTCGGTCACAGTGGACAA 40 257 802 Antisense
AGTGGACAACGATTCGATCCCGTGC 339 59 818 Antisense
ACCCGTTCAGCTCATAGTCATCGAG 28 91 853 Antisense
TGATGATGTCGTTGATGCCCACCGA 102 567 941 Antisense
ATGTCCTATAGAACTTGCGCGCACT 264 49 1000 Antisense
GATGGAACACTCTTGGCTATTTTTA 488 407 1053 Antisense
AAATTCCAGATCACTTGCGTGCACC 646 115 1187 Antisense
GCTCGTTGCGTCGAAGCCAAGACTC 225 299 1224 Antisense
CAAGACTCGCAGACGCACAATTCCG 220 185 1241 Antisense
GTAGGGCCCATTATTTTTTGTGACT 605 455 1285 Antisense
Sequence Source Affymetrix Proprietary Database