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[180590_s_at]

Description C18B12.6 /REP_DB=WormBase Gene ID /WP=CE08305 /TR=Q93541 /GB=CAB01751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 30      6grp_highest_nonorm > 90      6grp_total > 60      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 134
(-3)
P 		138.9
(-1.4)
A 		141.5
(-0.6)
P 		152.7
(3)
P 		19
B 119.6
(-3)
P 		150.7
(-0)
P 		182.2
(3)
P 		143.8
(-0.7)
P 		63
C 119.9
(-3)
P 		154.9
(-0.8)
P 		137.4
(-1.9)
P 		214.9
(3)
P 		95
avr 124.5
(-3) 		148.2
(0.1) 		153.7
(0.8) 		170.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 104.6
(-1.9)
P 		135.7
(1)
P 		115.4
(-0.9)
P 		158.1
(3)
P 		92.5
(-3)
P 		139.6
(1.3)
P 		66
B 119.5
(1)
P 		106.8
(-0.8)
P 		96.6
(-2.3)
P 		130.5
(2.6)
P 		133.5
(3)
P 		91.6
(-3)
P 		42
C 164.2
(1.9)
P 		138.4
(0.2)
P 		145.4
(0.6)
P 		181.3
(3)
P 		116.7
(-1.2)
P 		89.8
(-3)
P 		92
avr 129.4
(-0.3) 		127
(-0.6) 		119.1
(-1.5) 		156.6
(3) 		114.2
(-2.1) 		107
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 48.8
(3)
P 		30.2
(-1.2)
A 		37
(0.3)
P 		22.3
(-3)
P 		27
B 38.1
(0.9)
P 		37.2
(0.4)
P 		42.2
(3)
P 		30.7
(-3)
P 		12
C 39.7
(-1.2)
P 		44.5
(1.3)
P 		47.9
(3)
P 		36.2
(-3)
P 		12
avr 42.2
(2.9) 		37.3
(0.6) 		42.4
(3) 		29.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 19.3
(-3)
P 		48.3
(3)
P 		25.1
(-1.8)
P 		40.1
(1.3)
P 		27.9
(-1.2)
P 		34
(0)
P 		29
B 41.6
(0.5)
P 		35.5
(-0.7)
P 		23.5
(-3)
P 		34.6
(-0.8)
P 		54.2
(3)
P 		34.1
(-0.9)
P 		31
C 60.9
(3)
P 		42.2
(-0.6)
P 		37
(-1.7)
P 		36.5
(-1.8)
P 		37.8
(-1.5)
P 		30.1
(-3)
P 		31
avr 40.6
(2.4) 		42
(3) 		28.5
(-3) 		37.1
(0.8) 		40
(2.1) 		32.7
(-1.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180590_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17524
Sequence Type Exemplar sequence
Representative Public ID C18B12.6 NCBI
Target Description C18B12.6 /REP_DB=WormBase Gene ID /WP=CE08305 /TR=Q93541 /GB=CAB01751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078093 NCBI Caenorhabditis elegans C18B12.6 (C18B12.6) mRNA, complete cds. 11/11 None
SNAP00000040738 ENSEMBL cdna:SNAP chromosome:CEL140:X:15004307:15005764:-1 9/11 None
C18B12.6 ENSEMBL cdna:known chromosome:CEL140:X:15003992:15007224:-1 gene:C18B12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15004306-15006859(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B12.6
Entrez Gene 181597 Entrez gene
SwissProt Q93541 EMBL-EBI
WormBase CE32590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01751 Hypothetical protein C18B12.6 [Caenorhabditis elegans] emb|CAA20929.2| Hypothetical protein C18B12.6 [Caenorhabditis elegans] ref|NP_510494.2| C18B12.6 [Caenorhabditis elegans] 0.0
blast CAE63269 Hypothetical protein CBG07646 [Caenorhabditis briggsae] 0.0
blast CAB01751 Hypothetical protein C18B12.6 [Caenorhabditis elegans] emb|CAA20929.2| Hypothetical protein C18B12.6 [Caenorhabditis elegans] ref|NP_510494.2| C18B12.6 [Caenorhabditis elegans] 2.0E-89
blast CAE63269 Hypothetical protein CBG07646 [Caenorhabditis briggsae] 3.0E-74
blast XP_395190 PREDICTED: similar to ENSANGP00000003384 [Apis mellifera] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510494.2 1 41-63
C18B12.6 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:180590_S_AT
gaatccctgggttggtaacgccattggccggagctgaacatattagcgaatcaggcaagt
tttttaaaaccgttgataatttcaaaaaaaaacttaaatttaggacaagacatctaccga
agaagcagttgaaggaaggagagcattcacacggaggaattttgttcgagtatgagttta
cagcgaatgtcatcgaggtacacaaaacttcaataaccttgatctcatacctcatccgaa
tttgctcgatccttggcggtgtctatgcaaccagtacaattgtgaacaacatcctccaat
tctgcctatcacttgcctacactgataaggcgcacttggaacagttccaacatctccgcg
aatcgcgaacgagtgtgtcaacggactcacattcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCCTGGGTTGGTAACGCCATT 88 331 836 Antisense
CGCCATTGGCCGGAGCTGAACATAT 381 257 854 Antisense
GGAAGGAGAGCATTCACACGGAGGA 175 533 969 Antisense
GATCTCATACCTCATCCGAATTTGC 193 419 1056 Antisense
CCGAATTTGCTCGATCCTTGGCGGT 38 261 1071 Antisense
TGGCGGTGTCTATGCAACCAGTACA 75 545 1089 Antisense
TTGTGAACAACATCCTCCAATTCTG 630 707 1115 Antisense
GCCTATCACTTGCCTACACTGATAA 93 283 1139 Antisense
GATAAGGCGCACTTGGAACAGTTCC 432 421 1159 Antisense
TTCCAACATCTCCGCGAATCGCGAA 270 699 1180 Antisense
GTGTGTCAACGGACTCACATTCGGC 330 487 1208 Antisense
Sequence Source Affymetrix Proprietary Database