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[180589_at]

Description F14D2.9 /REP_DB=WormBase Gene ID /WP=CE16984 /TR=O44807 /GB=AAB94964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 34.4
(-2.1)
A 		29.1
(-3)
A 		34.1
(-2.2)
A 		64.9
(3)
A 		36
B 23
(1)
A 		29.6
(3)
A 		10.2
(-3)
A 		18
(-0.6)
A 		19
C 29.3
(-1.3)
A 		26.4
(-2.8)
A 		25.9
(-3)
A 		38
(3)
A 		12
avr 28.9
(-1) 		28.4
(-1.2) 		23.4
(-3) 		40.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 37
(3)
A 		15.1
(-1.2)
A 		13.2
(-1.5)
A 		5.6
(-3)
A 		19.7
(-0.3)
A 		11.5
(-1.9)
A 		31
B 16.9
(0.6)
A 		3.5
(-3)
A 		4
(-2.9)
A 		26
(3)
A 		7.7
(-1.9)
A 		16.7
(0.5)
A 		23
C 27.5
(0.7)
A 		41.9
(3)
A 		20.5
(-0.5)
A 		4.8
(-3)
A 		26.6
(0.5)
A 		6.2
(-2.8)
A 		37
avr 27.1
(3) 		20.2
(0.3) 		12.6
(-2.6) 		12.1
(-2.8) 		18
(-0.5) 		11.5
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.5
(3)
A 		6.3
(-3)
A 		8.9
(-0.5)
A 		9.5
(0.1)
A 		6
B 7.3
(3)
A 		7.3
(3)
A 		2.4
(-3)
A 		3.8
(-1.3)
A 		5
C 9.7
(3)
A 		7.6
(-0.8)
A 		9
(1.7)
A 		6.4
(-3)
A 		3
avr 9.8
(3) 		7.1
(-2.1) 		6.8
(-2.6) 		6.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.8
(3)
A 		5.4
(1.4)
A 		2.9
(-1.3)
A 		1.4
(-3)
A 		5.9
(2)
A 		2.8
(-1.4)
A 		5
B 5.9
(2)
A 		1.2
(-2.8)
A 		1
(-3)
A 		6.9
(3)
A 		3.1
(-0.9)
A 		6.2
(2.3)
A 		6
C 10.2
(1.7)
A 		12.8
(3)
A 		5.2
(-0.9)
A 		1
(-3)
A 		8.6
(0.9)
A 		2.1
(-2.4)
A 		12
avr 7.6
(3) 		6.5
(1.6) 		3
(-3) 		3.1
(-2.9) 		5.9
(0.8) 		3.7
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5675
Sequence Type Exemplar sequence
Representative Public ID F14D2.9 NCBI
Target Description F14D2.9 /REP_DB=WormBase Gene ID /WP=CE16984 /TR=O44807 /GB=AAB94964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062114 NCBI Caenorhabditis elegans F14D2.9 (F14D2.9) mRNA, complete cds. 11/11 A 
SNAP00000037067 ENSEMBL cdna:SNAP chromosome:CEL140:II:3352496:3353302:-1 11/11 None
GENEFINDER00000037087 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3352496:3353695:-1 11/11 None
F14D2.9 ENSEMBL cdna:known chromosome:CEL140:II:3352496:3356298:-1 gene:F14D2.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F14D2.9
Entrez Gene 184459 Entrez gene
SwissProt O44807 EMBL-EBI
WormBase CE36822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 0.0
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 1.0E-153
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 9.0E-72
blast CAE74762 Hypothetical protein CBG22589 [Caenorhabditis briggsae] 1.0E-64
blast CAE74762 Hypothetical protein CBG22589 [Caenorhabditis briggsae] 3.0E-64
blast CAE74762 Hypothetical protein CBG22589 [Caenorhabditis briggsae] 9.0E-64
Sequence
Target Sequence 
>C. ELEGANS:180589_AT
cgagcaccctccaaagagcggagccctgaattacaactataaagggttcttctctttcaa
ttcattgattgtgtccgactcggattacagaatcctttttgtgcagatgtgtaagaacgg
attgaattctgacgcacaactgtaccaaaatggtcctcttcccaggctcttgaccaaggc
aattgaaaatgtcggttatcgtactcttcctgatcccaacgtcctgatgccaccattcat
cctcgcggataatggtttcggtctccacaagtcgatgatgcaaccatataggccaaccca
aattggtctgaatccagaagagaatatcagtttcaatttcaagctgagcggtacacgagt
taaagtcgaaaacgttttcggagtattgacttcgaaattccacatcttccagcaaaatct
gaggctcgagccgaaaacgtcgcaggcactcatcattgctgtctgtgtggtccacaacat
ctctgtcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCACCCTCCAAAGAGCGGAGCC 368 251 1647 Antisense
GAGCGGAGCCCTGAATTACAACTAT 540 385 1662 Antisense
ATTCATTGATTGTGTCCGACTCGGA 655 11 1706 Antisense
TGAATTCTGACGCACAACTGTACCA 569 575 1769 Antisense
AAATGTCGGTTATCGTACTCTTCCT 452 119 1833 Antisense
CCTCGCGGATAATGGTTTCGGTCTC 495 263 1887 Antisense
GGTCTCCACAAGTCGATGATGCAAC 382 503 1906 Antisense
GATGCAACCATATAGGCCAACCCAA 180 413 1923 Antisense
GGCTCGAGCCGAAAACGTCGCAGGC 87 539 2069 Antisense
TCATCATTGCTGTCTGTGTGGTCCA 207 621 2096 Antisense
GTGGTCCACAACATCTCTGTCGGAC 332 489 2113 Antisense
Sequence Source Affymetrix Proprietary Database