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[180588_at]

Description Y38H6C.3 /REP_DB=WormBase Gene ID /WP=CE19097 /TR=Q9XX55 /GB=CAA20983.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 92.6
(3)
A 		7.8
(-3)
A 		8.6
(-2.9)
A 		15.9
(-2.4)
A 		85
B 95.4
(3)
A 		37.1
(-1)
A 		8.3
(-3)
A 		11.8
(-2.8)
A 		87
C 137.8
(3)
A 		11.5
(-2.9)
A 		8.3
(-3)
A 		101.4
(1.3)
A 		130
avr 108.6
(3) 		18.8
(-2.4) 		8.4
(-3) 		43
(-0.9) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 36.5
(0.8)
A 		10.1
(-2.7)
A 		53.2
(3)
A 		12.1
(-2.4)
A 		7.7
(-3)
A 		16.6
(-1.8)
A 		46
B 18.5
(3)
A 		9.4
(-0.8)
A 		10.2
(-0.5)
A 		4.2
(-3)
A 		5.7
(-2.4)
A 		7.1
(-1.8)
A 		14
C 9.7
(-1.8)
A 		38.9
(3)
A 		14.6
(-1)
A 		20.8
(0)
A 		2.6
(-3)
A 		6.3
(-2.4)
A 		36
avr 21.6
(1.7) 		19.5
(1.1) 		26
(3) 		12.4
(-0.9) 		5.3
(-3) 		10
(-1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 33.7
(3)
A 		1.7
(-3)
A 		2.2
(-2.9)
A 		2.3
(-2.9)
A 		32
B 30.4
(3)
A 		9.2
(-1.5)
A 		1.9
(-3)
A 		2.5
(-2.9)
A 		29
C 45.6
(3)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		17.1
(-1)
A 		43
avr 36.6
(3) 		4.7
(-2.6) 		2.3
(-3) 		7.3
(-2.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.7
(-0.2)
A 		3.6
(-2.2)
A 		11.6
(3)
A 		3.1
(-2.5)
A 		2.3
(-3)
A 		4
(-1.9)
A 		9
B 6.5
(3)
A 		3.1
(-0.8)
A 		2.5
(-1.4)
A 		1.1
(-3)
A 		2.3
(-1.7)
A 		2.6
(-1.3)
A 		5
C 3.6
(-1.5)
A 		11.9
(3)
A 		3.7
(-1.4)
A 		4.2
(-1.2)
A 		0.8
(-3)
A 		2.1
(-2.3)
A 		11
avr 5.6
(2.2) 		6.2
(3) 		5.9
(2.6) 		2.8
(-1.6) 		1.8
(-3) 		2.9
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14511
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.3 NCBI
Target Description Y38H6C.3 /REP_DB=WormBase Gene ID /WP=CE19097 /TR=Q9XX55 /GB=CAA20983.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075544 NCBI Caenorhabditis elegans Y38H6C.3 (Y38H6C.3) mRNA, complete cds. 11/11 None
GENEFINDER00000041340 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20497926:20498545:-1 11/11 None
Y38H6C.3 ENSEMBL cdna:known chromosome:CEL140:V:20497926:20498545:-1 gene:Y38H6C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041313 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20497925-20498545(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.3
Entrez Gene 189684 Entrez gene
SwissProt Q9XX55 EMBL-EBI
WormBase CE19097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20983 Hypothetical protein Y38H6C.3 [Caenorhabditis elegans] ref|NP_507945.1| Y38H6C.3 [Caenorhabditis elegans] 3.0E-59
blast AAA96182 Hypothetical protein K07C11.10 [Caenorhabditis elegans] ref|NP_505121.2| K07C11.10 [Caenorhabditis elegans] 2.0E-9
blast CAE56942 Hypothetical protein CBG24787 [Caenorhabditis briggsae] 8.0E-9
Sequence
Target Sequence 
>C. ELEGANS:180588_AT
ccccgatgctccgagtgtcgaggagaagctcaccgtcgatgagtgctacgttatttccaa
ggaagattggtttgagccaattttctgtaagccgaagcttatcccgttgaagactgtgaa
aatgcgagagatcgagaaacgacgcaatgaaaacatggagagggtcaaggcgatagagac
agcttcaacgtcagaacaaaagaacccagaggtggtacccaaggagccaaaaccagaaaa
gcctcggaacccggaagagctcaagaaacagaatgagttgaacaagatcgatttgtggat
cgccgacgaagatccggcacgtcgcaaacaacctctaaacctacatgatcatcctagtac
ttcttggcccaagcgctatgtccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGATGCTCCGAGTGTCGAGGAG 556 261 18 Antisense
GAGAAGCTCACCGTCGATGAGTGCT 661 391 40 Antisense
GATGAGTGCTACGTTATTTCCAAGG 261 411 55 Antisense
TTTGAGCCAATTTTCTGTAAGCCGA 593 667 88 Antisense
TAAGCCGAAGCTTATCCCGTTGAAG 143 637 105 Antisense
GAACCCAGAGGTGGTACCCAAGGAG 486 343 219 Antisense
AAGCCTCGGAACCCGGAAGAGCTCA 655 147 256 Antisense
GATCGCCGACGAAGATCCGGCACGT 387 415 315 Antisense
AACCTCTAAACCTACATGATCATCC 336 147 347 Antisense
ATGATCATCCTAGTACTTCTTGGCC 545 45 362 Antisense
TCTTGGCCCAAGCGCTATGTCCAAA 444 617 379 Antisense
Sequence Source Affymetrix Proprietary Database