[Home] | [Total List]

[180587_at]

Description F41E6.7 /REP_DB=WormBase Gene ID /WP=CE10256 /TR=O16455 /GB=AAB65957.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 80      6grp_total > 34      4grp_total > 37      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 270.4
(3)
P 		193.9
(0.6)
P 		80
(-3)
P 		204.3
(0.9)
P 		190
B 296.9
(3)
P 		274.6
(2.1)
P 		145.6
(-3)
P 		267
(1.8)
P 		151
C 337
(2.2)
P 		372.6
(3)
P 		115.2
(-3)
P 		287.6
(1)
P 		257
avr 301.4
(3) 		280.4
(2.3) 		113.6
(-3) 		253
(1.5) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 226.3
(-0.2)
P 		264.8
(1.1)
P 		325.9
(3)
P 		142.1
(-2.8)
P 		151.2
(-2.5)
P 		136.6
(-3)
P 		189
B 208.4
(0.7)
P 		254.5
(2.8)
P 		259.1
(3)
P 		182.7
(-0.4)
P 		125.9
(-3)
P 		204.8
(0.6)
P 		133
C 248.7
(3)
P 		244.3
(2.8)
P 		216.4
(1.8)
P 		158.1
(-0.3)
P 		81.5
(-3)
P 		207.5
(1.5)
P 		167
avr 227.8
(1.4) 		254.5
(2.5) 		267.1
(3) 		161
(-1.3) 		119.5
(-3) 		183
(-0.4) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 98.5
(3)
P 		42.1
(-1.4)
P 		20.9
(-3)
P 		29.9
(-2.3)
P 		78
B 94.7
(3)
P 		67.8
(0.3)
P 		33.8
(-3)
P 		56.9
(-0.7)
P 		61
C 111.5
(3)
P 		107.1
(2.6)
P 		40.2
(-3)
P 		48.5
(-2.3)
P 		71
avr 101.6
(3) 		72.3
(0.5) 		31.6
(-3) 		45.1
(-1.8) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 41.7
(-2.2)
P 		94.2
(3)
P 		71
(0.7)
P 		36
(-2.7)
P 		45.6
(-1.8)
P 		33.3
(-3)
P 		61
B 72.5
(1)
P 		84.7
(3)
P 		62.9
(-0.6)
P 		48.4
(-3)
P 		51.1
(-2.6)
P 		76.4
(1.6)
P 		36
C 92.2
(3)
P 		74.6
(1.4)
P 		55.1
(-0.4)
P 		31.8
(-2.5)
P 		26.4
(-3)
P 		69.5
(0.9)
P 		66
avr 68.8
(0.9) 		84.5
(3) 		63
(0.2) 		38.7
(-3) 		41
(-2.7) 		59.7
(-0.2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12063
Sequence Type Exemplar sequence
Representative Public ID F41E6.7 NCBI
Target Description F41E6.7 /REP_DB=WormBase Gene ID /WP=CE10256 /TR=O16455 /GB=AAB65957.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072815 NCBI Caenorhabditis elegans F41E6.7 (F41E6.7) mRNA, complete cds. 11/11 None
F41E6.7 ENSEMBL cdna:known chromosome:CEL140:V:8600563:8601477:-1 gene:F41E6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009420 6/11 Cross Hyb Matching Probes None
GENEFINDER00000009436 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8600563-8601478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.7
Entrez Gene 185618 Entrez gene
SwissProt O16455 EMBL-EBI
WormBase CE10256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65957 Hypothetical protein F41E6.7 [Caenorhabditis elegans] ref|NP_505216.1| F41E6.7 [Caenorhabditis elegans] 1.0E-103
blast CAE58360 Hypothetical protein CBG01482 [Caenorhabditis briggsae] 4.0E-49
Sequence
Target Sequence 
>C. ELEGANS:180587_AT
aagatatcagtgtctttgcctcttcaaatacaatactatctatcaaatcagacgtgtcgg
actcgaaactccatcgggatcatgtcatttcggtttgctctttgcctgtcgttttgagat
tggatttatcattgcgcggagagcgatcatcgagaccatctagaatgcaccatagaaaag
gtaaaaatggttcatctggcaacgcagctgttggaaaatctattggaagacgggaaagtg
gtatggaggcaatgacaaaactacgatacttgaacaaaaaaccactgtgcttacagtata
atgtaccaacgtcatacggaaggaaacattatgctcctggagcgaaacggagggagcaat
cattcattgtcgttattctctgtgggattgctcgattaatgcaatgggcggcggtggaat
ttcagcaagctgctgtggatttcctcgttaaacctgcccatgaactatttcccgatgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATATCAGTGTCTTTGCCTCTTC 676 155 50 Antisense
AGACGTGTCGGACTCGAAACTCCAT 371 71 99 Antisense
GGATCATGTCATTTCGGTTTGCTCT 661 511 126 Antisense
GCTCTTTGCCTGTCGTTTTGAGATT 182 299 146 Antisense
AGAGCGATCATCGAGACCATCTAGA 276 69 189 Antisense
ATGGTTCATCTGGCAACGCAGCTGT 508 51 236 Antisense
ATCATTCATTGTCGTTATTCTCTGT 153 31 408 Antisense
TATTCTCTGTGGGATTGCTCGATTA 557 663 423 Antisense
CAATGGGCGGCGGTGGAATTTCAGC 165 183 451 Antisense
CAAGCTGCTGTGGATTTCCTCGTTA 57 187 475 Antisense
GCCCATGAACTATTTCCCGATGAGC 61 287 505 Antisense
Sequence Source Affymetrix Proprietary Database