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[180586_at]

Description F57C9.2 /REP_DB=WormBase Gene ID /WP=CE11324 /TR=O01823 /GB=AAB54185.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 35.3
(3)
A 		17.2
(-0.4)
A 		3.8
(-3)
A 		33.3
(2.6)
A 		32
B 32.2
(1.6)
A 		39.4
(3)
A 		7.5
(-3)
A 		23.1
(-0.1)
A 		32
C 74.6
(3)
A 		14.3
(-2)
A 		2.4
(-3)
A 		18.6
(-1.7)
A 		72
avr 47.4
(3) 		23.6
(-0.3) 		4.6
(-3) 		25
(-0.1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.9
(-3)
A 		5.2
(-2.8)
A 		55.5
(3)
A 		13.2
(-1.9)
A 		17.1
(-1.5)
A 		10.1
(-2.3)
A 		52
B 5.5
(3)
A 		4.8
(1.6)
A 		3.6
(-0.8)
A 		5.4
(2.8)
A 		5.4
(2.8)
A 		2.5
(-3)
A 		3
C 3.2
(-3)
A 		12.3
(3)
A 		9.5
(1.2)
A 		7.7
(-0)
A 		4.5
(-2.1)
A 		3.3
(-2.9)
A 		9
avr 4.2
(-3) 		7.4
(-2) 		22.9
(3) 		8.8
(-1.5) 		9
(-1.5) 		5.3
(-2.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 12.9
(3)
A 		3.7
(-1.6)
A 		1
(-3)
A 		4.9
(-1)
A 		12
B 10.3
(3)
A 		9.7
(2.6)
A 		1.7
(-3)
A 		4.9
(-0.8)
A 		9
C 24.7
(3)
A 		4.1
(-2.2)
A 		0.8
(-3)
A 		3.1
(-2.4)
A 		24
avr 16
(3) 		5.8
(-1.1) 		1.2
(-3) 		4.3
(-1.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.9
(-2.4)
A 		12.1
(3)
A 		3.4
(-1.6)
A 		5.2
(-0.6)
A 		2.5
(-2.1)
A 		11
B 1.9
(1.6)
A 		1.6
(0.2)
A 		0.9
(-3)
A 		1.4
(-0.7)
A 		2.2
(3)
A 		0.9
(-3)
A 		1
C 1.2
(-2.8)
A 		3.7
(3)
A 		2.4
(-0)
A 		1.5
(-2.1)
A 		1.5
(-2.1)
A 		1.1
(-3)
A 		3
avr 1.3
(-3) 		2.4
(-1.3) 		5.1
(3) 		2.1
(-1.7) 		3
(-0.3) 		1.5
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.923
Sequence Type Exemplar sequence
Representative Public ID F57C9.2 NCBI
Target Description F57C9.2 /REP_DB=WormBase Gene ID /WP=CE11324 /TR=O01823 /GB=AAB54185.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059061 NCBI Caenorhabditis elegans F57C9.2 (F57C9.2) mRNA, complete cds. 11/11 None
SNAP00000003852 ENSEMBL cdna:SNAP chromosome:CEL140:I:4845124:4847337:1 11/11 None
GENEFINDER00000003859 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4845124:4847337:1 11/11 None
F57C9.2 ENSEMBL cdna:known chromosome:CEL140:I:4844909:4847917:1 gene:F57C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4845123-4847225(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C9.2
Entrez Gene 186446 Entrez gene
SwissProt O01823 EMBL-EBI
WormBase CE11324 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54185 Hypothetical protein F57C9.2 [Caenorhabditis elegans] ref|NP_491462.1| F57C9.2 [Caenorhabditis elegans] 1.0E-111
blast AAB54185 Hypothetical protein F57C9.2 [Caenorhabditis elegans] ref|NP_491462.1| F57C9.2 [Caenorhabditis elegans] 6.0E-79
blast CAE60350 Hypothetical protein CBG03946 [Caenorhabditis briggsae] 2.0E-64
blast CAE60350 Hypothetical protein CBG03946 [Caenorhabditis briggsae] 2.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491462.1 1 13-35
F57C9.2 1 13-35
SNAP00000003852 1 13-35
GENEFINDER00000003859 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:180586_AT
attcgacgattcgacgacgtccacccgtcaacttttcgatgagtcttcggctcatcatca
tcatcgtcatcatgctctccgcgtcgcaggttcccgtttccgcgacacgaaaacccgtta
tgtgtctgcaatgtggtggggaaaagtatgagggaagtgttaggctgtcacgcgacgagt
gctgtaaagctaccccaatcatgtgccttcaaggacaggtttgtctacgagcactcgtct
attctccgtatggtaatttcttcctatctggatgtcatcccgaagaagatcatttgagtg
ggtgtgatttccattcacttccacataattcatcagttcatcgatgtgtatgcaaagatg
gtgaatgccaaaatgatttccctggtgactgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGACGATTCGACGACGTCCACC 412 7 20 Antisense
CCACCCGTCAACTTTTCGATGAGTC 620 273 40 Antisense
GAAAACCCGTTATGTGTCTGCAATG 547 353 128 Antisense
GGGAAGTGTTAGGCTGTCACGCGAC 13 495 171 Antisense
GTCACGCGACGAGTGCTGTAAAGCT 16 467 186 Antisense
TGTAAAGCTACCCCAATCATGTGCC 568 557 202 Antisense
ACAGGTTTGTCTACGAGCACTCGTC 369 107 234 Antisense
CTCGTCTATTCTCCGTATGGTAATT 570 231 253 Antisense
TTCTTCCTATCTGGATGTCATCCCG 94 691 277 Antisense
ATTTCCATTCACTTCCACATAATTC 487 17 326 Antisense
AAATGATTTCCCTGGTGACTGTCCG 504 119 390 Antisense
Sequence Source Affymetrix Proprietary Database