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[180585_s_at] 7TM receptor, srbc family

Description T26E4.13 /REP_DB=WormBase Gene ID /WP=CE16484 /TR=O45844 /GB=CAB03439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 2.1
(-3)
A 		41.5
(0.7)
P 		19.5
(-1.4)
A 		65.6
(3)
P 		64
B 21.1
(1.9)
A 		5.2
(-2.3)
A 		2.6
(-3)
A 		25.1
(3)
A 		23
C 17.7
(-2.2)
A 		8.1
(-3)
A 		21.5
(-1.9)
A 		78.1
(3)
P 		70
avr 13.6
(-3) 		18.3
(-2.3) 		14.5
(-2.9) 		56.3
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.6
(2.5)
A 		10.3
(3)
A 		6.4
(0.4)
A 		2.4
(-2.3)
A 		4.3
(-1)
A 		1.3
(-3)
A 		9
B 11.4
(0.1)
A 		12.3
(0.3)
A 		21.8
(3)
A 		1.1
(-2.8)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		21
C 14
(0.1)
A 		11
(-0.9)
A 		22.3
(3)
A 		12.5
(-0.4)
A 		18.5
(1.7)
A 		5.1
(-3)
A 		17
avr 11.7
(0.9) 		11.2
(0.7) 		16.8
(3) 		5.3
(-1.8) 		7.8
(-0.7) 		2.3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.8
(-3)
A 		9
(2.6)
P 		5.1
(-0.1)
A 		9.6
(3)
P 		9
B 6.7
(3)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		5.3
(1.6)
A 		6
C 5.9
(-1)
A 		2.3
(-3)
A 		7.5
(-0.1)
A 		13.2
(3)
P 		11
avr 4.5
(-2.7) 		4.2
(-3) 		4.4
(-2.8) 		9.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.8
(-0.4)
A 		3.7
(3)
A 		1.4
(-1.1)
A 		0.6
(-2.5)
A 		1.3
(-1.2)
A 		0.3
(-3)
A 		3
B 4
(1.5)
A 		4.1
(1.6)
A 		5.3
(3)
A 		0.3
(-2.9)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		5
C 5.2
(1.9)
A 		3.4
(-0.6)
A 		5.7
(2.6)
A 		2.5
(-1.9)
A 		6
(3)
A 		1.7
(-3)
A 		4
avr 3.7
(2.3) 		3.7
(2.3) 		4.1
(3) 		1.1
(-2.3) 		2.5
(0.2) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180585_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13055
Sequence Type Exemplar sequence
Representative Public ID T26E4.13 NCBI
Target Description T26E4.13 /REP_DB=WormBase Gene ID /WP=CE16484 /TR=O45844 /GB=CAB03439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074373 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-76) (srbc-76) mRNA, complete cds. 11/11 A 
M01B2.4 ENSEMBL cdna:known chromosome:CEL140:V:15254968:15255877:1 gene:M01B2.4 11/11 A 
T26E4.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15807427:15808334:1 gene:T26E4.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15807426-15808334(+) 100.0 100.0
chrV:15254972-15255877(+) 95.32 95.32
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-76
Ensembl M01B2.4
T26E4.13
Entrez Gene 187355 Entrez gene
SwissProt O17958 EMBL-EBI
WormBase CE16266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05562 Hypothetical protein M01B2.4 [Caenorhabditis elegans] ref|NP_506774.1| Serpentine Receptor, class BC (class B-like) family member (srbc-76) [Caenorhabditis elegans] 1.0E-146
blast T25314 hypothetical protein T26E4.13 - Caenorhabditis elegans 1.0E-106
blast CAB05561 Hypothetical protein M01B2.3 [Caenorhabditis elegans] ref|NP_506775.1| Serpentine Receptor, class BC (class B-like) family member (srbc-75) [Caenorhabditis elegans] 7.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506774.1 7 10-32,45-67,82-104,125-144,179-201,214-233,248-270
M01B2.4 7 10-32,45-67,82-104,125-144,179-201,214-233,248-270
Sequence
Target Sequence 
>C. ELEGANS:180585_S_AT
agtatgaggtcaattttggcacttttaatatccattaagagagtttttgcaacttttatc
ccagtttatttccataagtatcggaataaatttccaaatgctctagttctctgcattatt
ttgtcaaagggatttctcgatcaatacatactttttgggttttgtggtaatgatatcgat
gcaccattgaaatgtaatggtattttctgtgctgtaaacagttgctataactcgttttat
ttctcaagcgagctggttgtgtattttgtgaatggagccttttcggctactctatttttt
tctgatttttcatttggaattatttttggaagatgcaaaaaaactgtgtttcaggccact
cgcattgcacttctcgactttttcatactattatttttcaatgttctctcttcacatttt
gttaacaatttaagaattgtcaatataagagaagtcggaccattaacagttgccacgaag
atgtttggatttgttattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATGAGGTCAATTTTGGCACTTT 249 63 283 Antisense
TTTGTGGTAATGATATCGATGCACC 467 667 443 Antisense
TGTAATGGTATTTTCTGTGCTGTAA 461 559 475 Antisense
TTCTGTGCTGTAAACAGTTGCTATA 237 695 487 Antisense
GTTGCTATAACTCGTTTTATTTCTC 384 439 503 Antisense
TCGTTTTATTTCTCAAGCGAGCTGG 9 603 514 Antisense
TTATTTTTCAATGTTCTCTCTTCAC 425 679 673 Antisense
GTTCTCTCTTCACATTTTGTTAACA 369 443 685 Antisense
AAGTCGGACCATTAACAGTTGCCAC 408 155 734 Antisense
ACAGTTGCCACGAAGATGTTTGGAT 167 107 748 Antisense
GAAGATGTTTGGATTTGTTATTGAA 508 337 759 Antisense
Sequence Source Affymetrix Proprietary Database