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[180584_at]

Description T26E4.13 /REP_DB=WormBase Gene ID /WP=CE16484 /TR=O45844 /GB=CAB03439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 27      6grp_cgc > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 6.3
(-3)
A 		27.9
(2.1)
A 		15.2
(-0.9)
A 		31.9
(3)
A 		26
B 26.3
(3)
P 		14.1
(-0)
A 		2.3
(-3)
A 		16.8
(0.6)
A 		24
C 10.3
(-3)
A 		20.8
(3)
A 		15.3
(-0.1)
A 		11.2
(-2.5)
A 		11
avr 14.3
(-1) 		20.9
(3) 		10.9
(-3) 		20
(2.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 20.8
(1.1)
A 		26.9
(3)
A 		22.1
(1.5)
A 		8
(-3)
A 		8.3
(-2.9)
A 		25.8
(2.7)
A 		19
B 11.6
(-0.2)
A 		20.7
(2.6)
P 		22
(3)
A 		3.9
(-2.6)
A 		2.7
(-3)
A 		12.4
(0)
A 		19
C 0.8
(-3)
A 		19.2
(1.3)
A 		2.6
(-2.6)
A 		1.6
(-2.8)
A 		26.2
(3)
P 		18.6
(1.2)
A 		25
avr 11.1
(-0.8) 		22.3
(3) 		15.6
(0.7) 		4.5
(-3) 		12.4
(-0.3) 		18.9
(1.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.3
(-3)
A 		6.1
(3)
A 		4
(-0.3)
A 		4.7
(0.8)
A 		4
B 8.4
(3)
P 		3.5
(-0.7)
A 		0.5
(-3)
A 		3.6
(-0.6)
A 		8
C 3.4
(-0.8)
A 		6
(3)
A 		5.3
(2)
A 		1.9
(-3)
A 		4
avr 4.7
(1.4) 		5.2
(3) 		3.3
(-3) 		3.4
(-2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.8
(-1.6)
A 		9.6
(3)
A 		4.8
(-0.8)
A 		2
(-3)
A 		2.5
(-2.6)
A 		6.3
(0.4)
A 		8
B 4
(0.1)
A 		6.9
(3)
P 		5.3
(1.4)
A 		1
(-3)
A 		1.1
(-2.9)
A 		4.6
(0.7)
A 		6
C 0.3
(-3)
A 		5.9
(1.1)
A 		0.7
(-2.7)
A 		0.3
(-3)
A 		8.5
(3)
P 		6.2
(1.3)
A 		8
avr 2.7
(-1.5) 		7.5
(3) 		3.6
(-0.7) 		1.1
(-3) 		4
(-0.3) 		5.7
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13055
Sequence Type Exemplar sequence
Representative Public ID T26E4.13 NCBI
Target Description T26E4.13 /REP_DB=WormBase Gene ID /WP=CE16484 /TR=O45844 /GB=CAB03439.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074373
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T26E4.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15807427:15808334:1 gene:T26E4.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15807426-15808334(+) 100.0 100.0
chrV:15254972-15255877(+) 95.32 95.32
Public Domain and Genome References
Ensembl T26E4.13
Sequence
Target Sequence 
>C. ELEGANS:180584_AT
aattttggcacttttaatatccattaagagagtttttgcaacttttatcccagtttattt
ccataagtatcggaataaatttccaaatgctctagttctctgcattattttgtcaaaggg
atttctcgatcaatacatactttttgggttttgtggtaatgatatcgatgcaccattgaa
atgtaatggtattttctgtgctgtaaacagttgctataactcgttttatttctcaagcga
gctggttgtgtattttgtgaatggagccttttcggctactctatttttttctgatttttc
atttggaattatttttggaagatgcaaaaaaactgtgtttcaggccactcgcattgcact
tctcgactttttcatactattatttttcaatgttctctcttcacattttgttaacaattt
aagaattgtcaatataagagaagtcggaccattaacagttgccacgaagatgtttggatt
tgttattgaaggattgataacgtgcctagtcttatttggtgggaaacgagtgtcttcttt
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTGGCACTTTTAATATCCATT 510 175 294 Antisense
TATTTTGTCAAAGGGATTTCTCGAT 317 661 399 Antisense
CTCGATCAATACATACTTTTTGGGT 705 195 418 Antisense
GATATCGATGCACCATTGAAATGTA 423 425 454 Antisense
GAGCTGGTTGTGTATTTTGTGAATG 388 387 532 Antisense
ATGGAGCCTTTTCGGCTACTCTATT 4 53 554 Antisense
AAAAACTGTGTTTCAGGCCACTCGC 8 131 621 Antisense
CTCGACTTTTTCATACTATTATTTT 570 233 655 Antisense
GAAGGATTGATAACGTGCCTAGTCT 235 335 781 Antisense
TAACGTGCCTAGTCTTATTTGGTGG 665 635 791 Antisense
GTGGGAAACGAGTGTCTTCTTTTGT 335 487 812 Antisense
Sequence Source Affymetrix Proprietary Database