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[180583_at]

Description F10C5.1 /REP_DB=WormBase Gene ID /WP=CE26888 /TR=Q19294 /GB=AAK68876.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 63      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 68.4
(3)
P 		46.8
(0.4)
A 		58.5
(1.8)
M 		18.4
(-3)
A 		50
B 54.7
(-2.1)
M 		50.8
(-3)
A 		77.2
(3)
P 		61.8
(-0.5)
A 		26
C 53
(0.2)
A 		30.1
(-3)
A 		57.2
(0.8)
P 		73
(3)
A 		43
avr 58.7
(1.5) 		42.6
(-3) 		64.3
(3) 		51.1
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 56.7
(2.1)
A 		40.1
(-2.7)
P 		38.9
(-3)
A 		44
(-1.5)
P 		46.6
(-0.8)
P 		59.8
(3)
P 		21
B 44.8
(-3)
A 		50.9
(-2.1)
P 		74.6
(1.6)
P 		51.1
(-2)
P 		83.9
(3)
P 		55.6
(-1.3)
P 		39
C 50.5
(-1.1)
A 		91.4
(3)
P 		31.6
(-3)
A 		35.9
(-2.6)
A 		71.7
(1)
P 		64.8
(0.3)
P 		60
avr 50.7
(-1.2) 		60.8
(1.3) 		48.4
(-1.8) 		43.7
(-3) 		67.4
(3) 		60.1
(1.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.9
(3)
P 		10.2
(-1)
A 		15.3
(0.4)
M 		2.7
(-3)
A 		22
B 17.4
(2.4)
M 		12.5
(-3)
A 		17.9
(3)
P 		13.2
(-2.2)
A 		5
C 17.6
(1.8)
A 		8.6
(-3)
A 		19.9
(3)
P 		12.3
(-1)
A 		11
avr 20
(3) 		10.4
(-2.4) 		17.7
(1.7) 		9.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.4
(-1.1)
A 		14.2
(2.6)
P 		8.5
(-3)
A 		11.2
(-0.3)
P 		14.1
(2.5)
P 		14.6
(3)
P 		6
B 15.6
(-2.4)
A 		17
(-2)
P 		18.1
(-1.7)
P 		13.5
(-3)
P 		34.1
(3)
P 		20.7
(-0.9)
P 		21
C 18.7
(0.3)
A 		27.9
(3)
P 		8
(-2.8)
A 		7.2
(-3)
A 		23.2
(1.6)
P 		21.7
(1.2)
P 		21
avr 14.9
(-1) 		19.7
(1.1) 		11.5
(-2.6) 		10.6
(-3) 		23.8
(3) 		19
(0.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8158
Sequence Type Exemplar sequence
Representative Public ID F10C5.1 NCBI
Target Description F10C5.1 /REP_DB=WormBase Gene ID /WP=CE26888 /TR=Q19294 /GB=AAK68876.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064802
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005005 ENSEMBL cdna:SNAP chromosome:CEL140:III:475453:482236:1 None
F10C5.1.1 ENSEMBL cdna:known chromosome:CEL140:III:475452:482305:1 gene:F10C5.1 A 
GENEFINDER00000005006 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:475453:482236:1 None
F10C5.1.2 ENSEMBL cdna:known chromosome:CEL140:III:475453:482305:1 gene:F10C5.1 A 
NM_064802 NCBI Caenorhabditis elegans Metaphase-to-Anaphase Transition defect family member (mat-3) (mat-3) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:478301-482236(+) 97.45 98.14
Public Domain and Genome References
Gene Title
Gene Symbol mat-3
Ensembl F10C5.1
Entrez Gene 175205 Entrez gene
SwissProt Q19294 EMBL-EBI
WormBase CE26888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68876 Metaphase-to-anaphase transition defect protein 3 [Caenorhabditis elegans] ref|NP_497203.1| Metaphase-to-Anaphase Transition defect family member (mat-3) [Caenorhabditis elegans] 0.0
blast CAE67168 Hypothetical protein CBG12598 [Caenorhabditis briggsae] 0.0
blast CAE69171 Hypothetical protein CBG15203 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Pfam IPR001440 EMBL-EBI TPR repeat 0.016
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-5
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.013
Sequence
Target Sequence 
>C. ELEGANS:180583_AT
gaagcttaatcgcattgaagacgctgaaaaatgtttcaccggagcatatttgtttggtga
tgtggaaggaaacgctttatggagcctggcaaaacttcatgaacgatattcggatgataa
taaggccgcacaagcttttgaagtttttttggtggtttatgagcttgtcacgtctgctga
ggagaagattatttatgcgatcgcgtttttggcgaatcatttcttcaaaattgaagattt
cgataaagcctccgaatatgcaacaaagtgtttggcttttgaaacgaaatttttcaattt
cgaagatacactatttttcaaatatgaaaatgttcaatataagctccaaaaactgatttg
ttcacaatttctgtcacaaagtttcctatattcttctcaattaaacgacccaattttgca
gctatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTAATCGCATTGAAGACGCT 538 341 1005 Antisense
AATGTTTCACCGGAGCATATTTGTT 584 163 1034 Antisense
AACGCTTTATGGAGCCTGGCAAAAC 131 143 1075 Antisense
ATAATAAGGCCGCACAAGCTTTTGA 431 1 1121 Antisense
TATGAGCTTGTCACGTCTGCTGAGG 218 655 1162 Antisense
ATGCGATCGCGTTTTTGGCGAATCA 413 41 1199 Antisense
GAAAATGTTCAATATAAGCTCCAAA 70 355 1330 Antisense
GATTTGTTCACAATTTCTGTCACAA 671 427 1359 Antisense
CACAAAGTTTCCTATATTCTTCTCA 372 195 1379 Antisense
TATTCTTCTCAATTAAACGACCCAA 93 665 1393 Antisense
AACGACCCAATTTTGCAGCTATGTC 448 143 1408 Antisense
Sequence Source Affymetrix Proprietary Database