[Home] | [Total List]

[180582_at] 7TM chemoreceptor, srw family

Description T03D3.3 /REP_DB=WormBase Gene ID /WP=CE13072 /TR=O16980 /GB=AAG24187.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 01      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 17.3
(-3)
A 		17.9
(-2.9)
A 		27.8
(-2.1)
A 		89.1
(3)
M 		72
B 33.9
(-1.4)
A 		43.9
(3)
A 		39.6
(1.1)
A 		30.4
(-3)
A 		14
C 28.2
(-0.9)
A 		7.2
(-3)
A 		21.4
(-1.6)
A 		66.7
(3)
A 		60
avr 26.5
(-2.5) 		23
(-3) 		29.6
(-2) 		62.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.3
(-2.8)
A 		30.9
(-0)
A 		57.9
(3)
A 		23.4
(-0.9)
A 		39.9
(1)
A 		4.7
(-3)
A 		53
B 25.8
(-1.8)
A 		31.5
(-0.9)
A 		55.8
(3)
A 		34.5
(-0.4)
A 		35
(-0.3)
P 		18.4
(-3)
A 		37
C 3.6
(-3)
A 		47.1
(2.3)
A 		28.9
(0.1)
A 		52.5
(3)
A 		22.5
(-0.7)
A 		9.5
(-2.3)
A 		49
avr 11.9
(-2.8) 		36.5
(1.2) 		47.5
(3) 		36.8
(1.2) 		32.5
(0.5) 		10.9
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.3
(-1.4)
A 		3.9
(-3)
A 		7.3
(-0.8)
A 		13
(3)
M 		9
B 10.8
(3)
A 		10.8
(3)
A 		9.2
(0.8)
A 		6.5
(-3)
A 		4
C 9.3
(1.7)
A 		2.1
(-3)
A 		7.5
(0.6)
A 		11.2
(3)
A 		9
avr 8.8
(1.2) 		5.6
(-3) 		8
(0.1) 		10.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		11
(2.2)
A 		12.6
(3)
A 		5.9
(-0.5)
A 		12
(2.7)
A 		1.1
(-3)
A 		12
B 9
(-1.3)
A 		10.5
(-0)
A 		13.6
(2.5)
A 		9.1
(-1.2)
A 		14.2
(3)
P 		6.9
(-3)
A 		7
C 1.3
(-3)
A 		14.4
(3)
A 		7.4
(-0.2)
A 		10.6
(1.3)
A 		7.3
(-0.3)
A 		3.2
(-2.1)
A 		13
avr 3.8
(-2.9) 		12
(3) 		11.2
(2.4) 		8.5
(0.5) 		11.2
(2.4) 		3.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14894
Sequence Type Exemplar sequence
Representative Public ID T03D3.3 NCBI
Target Description T03D3.3 /REP_DB=WormBase Gene ID /WP=CE13072 /TR=O16980 /GB=AAG24187.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071365 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-2) (srw-2) mRNA, complete cds. 11/11 None
SNAP00000008136 ENSEMBL cdna:SNAP chromosome:CEL140:V:2830838:2834748:1 10/11 None
GENEFINDER00000008144 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2830838:2834748:1 10/11 None
T03D3.3 ENSEMBL cdna:known chromosome:CEL140:V:2830838:2832404:1 gene:T03D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2830837-2832404(+) 93.39 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-2
Ensembl T03D3.3
Entrez Gene 188012 Entrez gene
SwissProt O16980 EMBL-EBI
WormBase CE33822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503766 Serpentine Receptor, class W family member (srw-2) [Caenorhabditis elegans] gb|AAG24187.2| Serpentine receptor, class w protein 2 [Caenorhabditis elegans] 0.0
blast NP_503767 Serpentine Receptor, class J family member (srj-50) [Caenorhabditis elegans] gb|AAG24191.1| Serpentine receptor, class j protein 50 [Caenorhabditis elegans] 1.0E-134
blast NP_503767 Serpentine Receptor, class J family member (srj-50) [Caenorhabditis elegans] gb|AAG24191.1| Serpentine receptor, class j protein 50 [Caenorhabditis elegans] 1.0E-133
blast CAE65515 Hypothetical protein CBG10489 [Caenorhabditis briggsae] 1.0E-110
blast CAE65515 Hypothetical protein CBG10489 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503766.2 7 40-62,75-97,132-149,161-183,226-248,274-296,311-333
T03D3.3 7 40-62,75-97,132-149,161-183,226-248,274-296,311-333
SNAP00000008136 11 40-62,75-97,132-149,161-183,226-248,274-296,311-333,380-402,417-439,501-523,538-560
GENEFINDER00000008144 10 57-79,119-136,148-170,213-235,261-283,298-320,411-433,453-475,496-518,533-555
Sequence
Target Sequence 
>C. ELEGANS:180582_AT
ctgcaaatgcgtcccgttacataaggacggttccagttggcaagaaagagcttcactcga
cacttgtctttatttatggaatcatcaaagcactcccttcgttggtcgaaccaatacttg
cggtaatactcataatggagctgaagagagcttcacagcgcaggaaaacaatgctgaagt
ctgatggaaaaggggagaacactacgaagctcatacttttcatgacgatttcatcttttc
tgctggaagtcccgaatggtttttcacattttgcctttggatttttcactactagcccac
ttataaaaacagcttcatatctgattatggtgtttgccgaaattttcccggttaccaatt
catccactcatctttttgtctgctttttcatgtcaactctttatcgagaaaccgctattt
ctatgatgggcatttccaagcagaaggtgggagaagttctgagagaaagccatgtaaaat
cttatgcttcagatcacaaaagtggaagaggtccggcagacttcggtagccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCAAATGCGTCCCGTTACATAAG 598 227 749 Antisense
AAAGAGCTTCACTCGACACTTGTCT 21 123 793 Antisense
ATGGAATCATCAAAGCACTCCCTTC 355 51 824 Antisense
TCATCTTTTCTGCTGGAAGTCCCGA 2 621 979 Antisense
GGAAGTCCCGAATGGTTTTTCACAT 164 1 993 Antisense
GGTTTTTCACATTTTGCCTTTGGAT 652 505 1006 Antisense
GCCTTTGGATTTTTCACTACTAGCC 237 281 1021 Antisense
CAATTCATCCACTCATCTTTTTGTC 572 179 1104 Antisense
ATCTTTTTGTCTGCTTTTTCATGTC 621 31 1118 Antisense
AACCGCTATTTCTATGATGGGCATT 124 147 1158 Antisense
GTCCGGCAGACTTCGGTAGCCAGAT 161 477 1259 Antisense
Sequence Source Affymetrix Proprietary Database