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[180581_at]

Description CTEL7X.1 /REP_DB=WormBase Gene ID /WP=CE20618 /TR=Q9XXA0 /GB=CAA20336.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 16      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 3.2
(-3)
A 		10.4
(-2.4)
A 		56.1
(1.4)
A 		75.4
(3)
M 		72
B 22.2
(3)
A 		8.7
(-1.5)
A 		4.1
(-3)
A 		18.5
(1.8)
A 		18
C 9.5
(-3)
A 		31.8
(-0.5)
A 		24.7
(-1.3)
A 		63.3
(3)
A 		54
avr 11.6
(-3) 		17
(-2.2) 		28.3
(-0.5) 		52.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 43.3
(3)
A 		3.6
(-3)
A 		4.9
(-2.8)
A 		15.1
(-1.3)
A 		18.9
(-0.7)
A 		5.3
(-2.7)
A 		40
B 26
(3)
A 		18.6
(1.1)
A 		2.3
(-3)
A 		6.4
(-2)
A 		17.1
(0.7)
A 		14.3
(0)
A 		24
C 21.7
(0.3)
A 		38.4
(3)
A 		6.1
(-2.3)
A 		7.6
(-2)
A 		1.6
(-3)
A 		14.8
(-0.8)
A 		37
avr 30.3
(3) 		20.2
(0.7) 		4.4
(-3) 		9.7
(-1.8) 		12.5
(-1.1) 		11.5
(-1.4) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		2.3
(-2.5)
A 		14.7
(3)
A 		11
(1.4)
M 		14
B 7.1
(3)
A 		2.2
(-1.7)
A 		0.9
(-3)
A 		3.9
(-0.1)
A 		6
C 3.1
(-3)
A 		9.1
(1.7)
A 		8.6
(1.3)
A 		10.7
(3)
A 		8
avr 3.8
(-3) 		4.5
(-2.1) 		8.1
(2.5) 		8.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8
(3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		3.8
(-0.7)
A 		5.7
(1)
A 		1.3
(-2.8)
A 		7
B 9
(3)
A 		6.2
(1)
A 		0.6
(-3)
A 		1.7
(-2.2)
A 		6.9
(1.5)
A 		5.3
(0.4)
A 		8
C 8.1
(1.1)
A 		11.7
(3)
A 		1.6
(-2.4)
A 		1.5
(-2.5)
A 		0.5
(-3)
A 		4.9
(-0.6)
A 		11
avr 8.4
(3) 		6.4
(1.4) 		1.1
(-3) 		2.3
(-2) 		4.4
(-0.3) 		3.8
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18395
Sequence Type Exemplar sequence
Representative Public ID CTEL7X.1 NCBI
Target Description CTEL7X.1 /REP_DB=WormBase Gene ID /WP=CE20618 /TR=Q9XXA0 /GB=CAA20336.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075637 NCBI Caenorhabditis elegans cTel7X.1 (cTel7X.1) mRNA, complete cds. 11/11 None
SNAP00000029399 ENSEMBL cdna:SNAP chromosome:CEL140:X:16672:19327:-1 10/11 None
GENEFINDER00000042786 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1286:1935:1 11/11 None
cTel7X.1 ENSEMBL cdna:known chromosome:CEL140:X:1316:1935:1 gene:cTel7X.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182459 6/11 Cross Hyb Matching Probes None
NM_001026595 7/11 Cross Hyb Matching Probes None
SNAP00000033982 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034088 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029402 6/11 Cross Hyb Matching Probes None
SNAP00000042785 6/11 Cross Hyb Matching Probes None
Y47G6A.30 7/11 Cross Hyb Matching Probes None
VY35H6BL.2 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1315-1935(+) 100.0 100.0
chrX:18707-19327(-) 100.0 100.0
chrI:3523971-3524592(-) 96.55 96.55
Public Domain and Genome References
Gene Title
Ensembl cTel7X.1
Entrez Gene 183880 Entrez gene
SwissProt Q9XXA0 EMBL-EBI
WormBase CE20618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56285 Hypothetical protein CE7X_3.1 [Caenorhabditis elegans] ref|NP_872257.1| CE7X_3.1 [Caenorhabditis elegans] 1.0E-60
blast NP_001023456 Y38F2AR.13 [Caenorhabditis elegans] gb|AAP13754.1| Hypothetical protein Y38F2AR.13 [Caenorhabditis elegans] 6.0E-49
blast CAA20336 Hypothetical protein cTel7X.1 [Caenorhabditis elegans] ref|NP_508038.1| cTel7X.1 [Caenorhabditis elegans] 6.0E-43
blast CAA20336 Hypothetical protein cTel7X.1 [Caenorhabditis elegans] ref|NP_508038.1| cTel7X.1 [Caenorhabditis elegans] 2.0E-34
blast AAM45370 Polyq (poly glutamine tract) toxicity enhancer protein 1, isoform e [Caenorhabditis elegans] ref|NP_741133.1| PolyQ (poly glutamine tract) toxicity Enhancer family member (pqe-1) [Caenorhabditis elegans] 1.0E-19
blast AAM45369 Polyq (poly glutamine tract) toxicity enhancer protein 1, isoform d [Caenorhabditis elegans] ref|NP_741134.1| PolyQ (poly glutamine tract) toxicity Enhancer family member (pqe-1) [Caenorhabditis elegans] 1.0E-19
blast NP_001021766 Y47G6A.30 [Caenorhabditis elegans] gb|AAP68912.1| Hypothetical protein Y47G6A.30 [Caenorhabditis elegans] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:180581_AT
atggctcggctccagaatgcattgaaagttgttggatggtcgaatggattgaaagcaatt
gtaaagaaggagttacccggaagccctgccaaaaagcaaaaaccggcatcggttgcgccg
aaaattttggactcctcgatcggaagaacctggagtcatcctagcaaacgaggcaacact
ggaagaggacgaaaaacgttaagattccgtatgaagatgtcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCGGCTCCAGAATGCATTGA 554 53 13 Antisense
GCTCGGCTCCAGAATGCATTGAAAG 573 299 16 Antisense
GTTGTTGGATGGTCGAATGGATTGA 324 435 40 Antisense
CAAAAACCGGCATCGGTTGCGCCGA 665 171 109 Antisense
GTTGCGCCGAAAATTTTGGACTCCT 105 441 124 Antisense
GAAAATTTTGGACTCCTCGATCGGA 302 353 132 Antisense
GGACTCCTCGATCGGAAGAACCTGG 652 523 141 Antisense
GAAGAACCTGGAGTCATCCTAGCAA 582 339 155 Antisense
GTCATCCTAGCAAACGAGGCAACAC 488 467 167 Antisense
GAGGCAACACTGGAAGAGGACGAAA 283 405 182 Antisense
AAGATTCCGTATGAAGATGTCAGAA 483 155 213 Antisense
Sequence Source Affymetrix Proprietary Database