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[180580_at]

Description C35E7.8 /REP_DB=WormBase Gene ID /WP=CE17521 /TR=O61766 /GB=AAC17527.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30.4
(-3)
A 		33
(-2.6)
A 		59.2
(1.7)
A 		67.4
(3)
A 		37
B 23.6
(-3)
A 		67.7
(1.7)
A 		41.7
(-1.1)
A 		79.8
(3)
M 		56
C 63.1
(3)
A 		47.8
(-2.6)
A 		46.6
(-3)
A 		59.1
(1.5)
A 		17
avr 39
(-3) 		49.5
(-0.9) 		49.2
(-0.9) 		68.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 2.4
(-3)
A 		30.6
(-1.9)
A 		39.8
(-1.6)
M 		90.5
(0.4)
P 		157.9
(3)
P 		158.4
(3)
M 		156
B 26.9
(-3)
A 		38.1
(-2.6)
A 		65.5
(-1.5)
A 		75.5
(-1.1)
A 		172.4
(2.7)
P 		180
(3)
P 		153
C 14.5
(-3)
A 		48
(-1.9)
A 		74.6
(-1)
A 		117.2
(0.4)
P 		122
(0.6)
P 		195.9
(3)
P 		181
avr 14.6
(-3) 		38.9
(-2.1) 		60
(-1.3) 		94.4
(-0.1) 		150.8
(2) 		178.1
(3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.1
(-0.2)
A 		7.2
(-3)
A 		15.5
(3)
A 		9.9
(-1)
A 		8
B 7.5
(-3)
A 		16.7
(2.8)
A 		9.7
(-1.6)
A 		17
(3)
M 		10
C 20.9
(3)
A 		13.7
(-1)
A 		16.3
(0.5)
A 		10
(-3)
A 		11
avr 13.2
(0.6) 		12.5
(-2.2) 		13.8
(3) 		12.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 0.4
(-3)
A 		10.9
(-1.7)
A 		8.7
(-1.9)
M 		23
(-0.1)
P 		47.7
(3)
P 		38.6
(1.8)
M 		47
B 9.4
(-3)
A 		12.7
(-2.7)
A 		15.9
(-2.4)
A 		20
(-2)
A 		70
(3)
P 		67.1
(2.7)
P 		61
C 5.4
(-3)
A 		14.6
(-2.1)
A 		19
(-1.6)
A 		23.6
(-1.2)
P 		39.5
(0.4)
P 		65.6
(3)
P 		60
avr 5.1
(-3) 		12.7
(-2.1) 		14.5
(-1.9) 		22.2
(-1) 		52.4
(2.5) 		57.1
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1228
Sequence Type Exemplar sequence
Representative Public ID C35E7.8 NCBI
Target Description C35E7.8 /REP_DB=WormBase Gene ID /WP=CE17521 /TR=O61766 /GB=AAC17527.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060424 NCBI Caenorhabditis elegans C35E7.8 (C35E7.8) mRNA, complete cds. 11/11 None
GENEFINDER00000013381 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10816728:10818162:1 11/11 None
SNAP00000013369 ENSEMBL cdna:SNAP chromosome:CEL140:I:10816868:10818505:1 11/11 None
C35E7.8 ENSEMBL cdna:known chromosome:CEL140:I:10816728:10817636:1 gene:C35E7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10816658-10817567(+) 100.0 100.0
chrIV:5274527-5275435(+) 93.26 93.26
Public Domain and Genome References
Gene Title
Ensembl C35E7.8
Entrez Gene 183245 Entrez gene
SwissProt O61766 EMBL-EBI
WormBase CE17521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26929 Hypothetical protein F36H12.2 [Caenorhabditis elegans] ref|NP_500768.2| F36H12.2 [Caenorhabditis elegans] 0.0
blast AAC26929 Hypothetical protein F36H12.2 [Caenorhabditis elegans] ref|NP_500768.2| F36H12.2 [Caenorhabditis elegans] 1.0E-159
blast AAC17527 Hypothetical protein C35E7.8 [Caenorhabditis elegans] ref|NP_492825.1| C35E7.8 [Caenorhabditis elegans] 1.0E-144
blast AAC17527 Hypothetical protein C35E7.8 [Caenorhabditis elegans] ref|NP_492825.1| C35E7.8 [Caenorhabditis elegans] 1.0E-143
blast CAE63910 Hypothetical protein CBG08481 [Caenorhabditis briggsae] 1.0E-128
blast AAC17527 Hypothetical protein C35E7.8 [Caenorhabditis elegans] ref|NP_492825.1| C35E7.8 [Caenorhabditis elegans] 1.0E-124
blast AAC26929 Hypothetical protein F36H12.2 [Caenorhabditis elegans] ref|NP_500768.2| F36H12.2 [Caenorhabditis elegans] 1.0E-115
blast CAE63910 Hypothetical protein CBG08481 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:180580_AT
atacggacgagtcactaccggcgtctcgtacaacttggtgactggaaaaatcccgaagac
cgtgttcgaacaggtgaaagccaaagacgacgagaatgataacgtggaattcgaaatgga
gcacttggaagataaagagacagctcacaagacacagacattcgatgagctttatgaaag
ccagatgccgaaatatttcgattatcagagcaatttctccgatgtcaacgggatttggac
actacttttcgaccaaaatcactatgaaaagatgtcgacatttgagttacaagcggcaat
ttgtgcagctttgaactctaaacattttatgatgatttgtgtaggaatcgatgcatttaa
tgctgtaactggagttgagatgtctgcgaaggatcgagttgtgtttagaatggctctgac
gagagctgttgctggagaatttcagccaccattggttaaagttgctccgaagcagctcac
cggagtttctccaatgaaacgtgacatttcagaagtcacttcatcaatcgatgttctatt
tgttcctgtgattggtgtgactgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGGACGAGTCACTACCGGCGTC 126 1 168 Antisense
AATCCCGAAGACCGTGTTCGAACAG 540 165 216 Antisense
GACAGCTCACAAGACACAGACATTC 290 369 306 Antisense
GAGCAATTTCTCCGATGTCAACGGG 625 389 375 Antisense
TCAACGGGATTTGGACACTACTTTT 543 627 392 Antisense
GTCGACATTTGAGTTACAAGCGGCA 228 475 441 Antisense
GCCACCATTGGTTAAAGTTGCTCCG 638 279 612 Antisense
TAAAGTTGCTCCGAAGCAGCTCACC 650 639 624 Antisense
AAGTCACTTCATCAATCGATGTTCT 690 157 680 Antisense
ATCGATGTTCTATTTGTTCCTGTGA 173 37 694 Antisense
TGTTCCTGTGATTGGTGTGACTGAT 460 563 708 Antisense
Sequence Source Affymetrix Proprietary Database