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[180578_at]

Description D1065.1 /REP_DB=WormBase Gene ID /WP=CE09051 /TR=O16196 /GB=AAG24020.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 30.3
(-3)
A 		48.2
(-1.3)
A 		33.3
(-2.7)
A 		93
(3)
P 		63
B 51.7
(-1.8)
A 		35.8
(-3)
A 		36.8
(-2.9)
A 		113.9
(3)
P 		78
C 45.3
(-1.6)
A 		27.9
(-2.5)
A 		19.6
(-3)
A 		126.8
(3)
P 		107
avr 42.4
(-2.1) 		37.3
(-2.5) 		29.9
(-3) 		111.2
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 103.5
(3)
M 		24.5
(-2.3)
A 		43.2
(-1.1)
A 		47.2
(-0.8)
A 		41
(-1.2)
A 		14.2
(-3)
A 		89
B 35.1
(-1.1)
A 		57.2
(1.2)
A 		74.2
(3)
A 		65.5
(2.1)
A 		48.8
(0.3)
A 		16.9
(-3)
A 		57
C 76
(3)
A 		72.7
(2.7)
P 		10.8
(-3)
A 		60.7
(1.6)
A 		12
(-2.9)
A 		12.8
(-2.8)
A 		65
avr 71.5
(3) 		51.5
(0.9) 		42.7
(-0) 		57.8
(1.6) 		33.9
(-1) 		14.6
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11
(-0.2)
A 		10.5
(-0.8)
A 		8.7
(-3)
A 		13.6
(3)
P 		5
B 16.5
(0)
A 		8.8
(-2.9)
A 		8.5
(-3)
A 		24.3
(3)
P 		16
C 15
(0.4)
A 		8
(-2.5)
A 		6.8
(-3)
A 		21.4
(3)
P 		15
avr 14.2
(0.2) 		9.1
(-2.4) 		8
(-3) 		19.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 19.1
(3)
M 		8.7
(-1)
A 		9.4
(-0.7)
A 		12
(0.3)
A 		12.4
(0.4)
A 		3.5
(-3)
A 		16
B 12.2
(-0.4)
A 		19
(2.6)
A 		18
(2.2)
A 		17.3
(1.9)
A 		19.8
(3)
A 		6.3
(-3)
A 		14
C 28.2
(3)
A 		22.2
(1.6)
P 		2.7
(-3)
A 		12.2
(-0.8)
A 		3.9
(-2.7)
A 		4.3
(-2.6)
A 		26
avr 19.8
(3) 		16.6
(1.7) 		10
(-0.9) 		13.8
(0.6) 		12
(-0.1) 		4.7
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14885
Sequence Type Exemplar sequence
Representative Public ID D1065.1 NCBI
Target Description D1065.1 /REP_DB=WormBase Gene ID /WP=CE09051 /TR=O16196 /GB=AAG24020.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071735 NCBI Caenorhabditis elegans D1065.1 (D1065.1) mRNA, complete cds. 11/11 None
SNAP00000024539 ENSEMBL cdna:SNAP chromosome:CEL140:V:4073568:4077361:1 11/11 None
D1065.1 ENSEMBL cdna:known chromosome:CEL140:V:4073568:4077361:1 gene:D1065.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024543 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4073567-4077361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1065.1
Entrez Gene 183919 Entrez gene
SwissProt O16196 EMBL-EBI
WormBase CE09051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504136 D1065.1 [Caenorhabditis elegans] gb|AAG24020.1| Hypothetical protein D1065.1 [Caenorhabditis elegans] 0.0
blast CAE58380 Hypothetical protein CBG01509 [Caenorhabditis briggsae] 0.0
blast AAC48028 Hypothetical protein F45F2.5 [Caenorhabditis elegans] ref|NP_505196.1| F45F2.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504136.1 12 50-72,82-101,103-122,152-174,181-202,217-236,301-323,351-373,385-407,458-480,497-514,529-548
D1065.1 12 50-72,82-101,103-122,152-174,181-202,217-236,301-323,351-373,385-407,458-480,497-514,529-548
SNAP00000024539 12 50-72,82-101,103-122,152-174,181-202,217-236,292-314,342-364,376-398,449-471,488-505,520-539
Sequence
Target Sequence 
>C. ELEGANS:180578_AT
gtgatactactttttgcatgtcttcttgcactatttcaaatgcgaaaactacagtacact
tcacatgtgcatggagaagttattgatgatatcttgttgattgtgggattggctggagaa
tgtgtatattcgtgtgctgcaatcgatttatatgtaaatgaaaagttgatggatcgtccg
gttccttatatcacaatgattgcgttttcattgagaatcactgaagttatagttcagaca
ttgttcattctaatagctgcgagaatgagaagctcaccacttagcaacaaacaacctgga
aaacaagttataacttttcttttgatctgcaacatcaatctgtttatctatcacacattt
gaaacaacagaatccagttttgggtttcctgccaaagtgtcagaagtctacacggtgatg
cttaccattgcgtctccaatcgtggtcttctacaggtttcatagttcggcgtgtttggca
gaaatctggaagaatacgtatttgcggaacggtcacgatgcgaacgttgggcctgcagat
tctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATACTACTTTTTGCATGTCTTC 629 483 1195 Antisense
GCATGTCTTCTTGCACTATTTCAAA 317 311 1210 Antisense
ATCGTCCGGTTCCTTATATCACAAT 695 33 1367 Antisense
GAGAAGCTCACCACTTAGCAACAAA 17 393 1461 Antisense
GAATCCAGTTTTGGGTTTCCTGCCA 196 327 1564 Antisense
ACACGGTGATGCTTACCATTGCGTC 600 107 1604 Antisense
TACCATTGCGTCTCCAATCGTGGTC 576 647 1617 Antisense
AATCGTGGTCTTCTACAGGTTTCAT 489 169 1632 Antisense
CAGGTTTCATAGTTCGGCGTGTTTG 383 207 1647 Antisense
TTTGCGGAACGGTCACGATGCGAAC 286 669 1695 Antisense
GAACGTTGGGCCTGCAGATTCTAAT 437 345 1716 Antisense
Sequence Source Affymetrix Proprietary Database