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[180577_at]

Description C03H12.1 /REP_DB=WormBase Gene ID /WP=CE25753 /TR=O17564 /GB=CAB97241.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 02      4grp_highest_8_8 > 45      4grp_high_8_8 > 10      6grp_highest_nonorm > 71      6grp_total > 34      4grp_total > 22      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 408.9
(2.3)
P 		349.7
(-0)
P 		274.1
(-3)
P 		426.7
(3)
P 		153
B 426.9
(3)
P 		287
(-3)
P 		286.7
(-3)
P 		417.9
(2.6)
P 		140
C 401.2
(2.9)
P 		317.4
(-3)
P 		400
(2.8)
P 		402.2
(3)
P 		85
avr 412.3
(2.8) 		318
(-3) 		320.3
(-2.9) 		415.6
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 399.1
(3)
P 		380.2
(2.4)
P 		334.6
(0.9)
P 		310.7
(0.1)
P 		217.7
(-3)
P 		263.9
(-1.5)
P 		181
B 427.5
(2.7)
P 		409.9
(2.1)
P 		437.2
(3)
P 		340.1
(-0.2)
P 		256.7
(-3)
P 		321.2
(-0.9)
P 		181
C 292.8
(-0.1)
P 		375.4
(3)
P 		352.5
(2.1)
P 		344.2
(1.8)
P 		214.4
(-3)
P 		322.6
(1)
P 		161
avr 373.1
(2.4) 		388.5
(3) 		374.8
(2.5) 		331.7
(0.9) 		229.6
(-3) 		302.6
(-0.2) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 148.9
(3)
P 		75.9
(-2.1)
P 		71.7
(-2.4)
P 		62.5
(-3)
P 		86
B 136.1
(3)
P 		70.9
(-2.6)
P 		66.4
(-3)
P 		89
(-1.1)
P 		70
C 132.8
(2.4)
P 		91.3
(-1)
P 		139.4
(3)
P 		67.8
(-3)
P 		72
avr 139.3
(3) 		79.4
(-2.4) 		92.5
(-1.2) 		73.1
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 73.6
(-2.2)
P 		135.2
(3)
P 		72.9
(-2.3)
P 		78.8
(-1.8)
P 		65.7
(-2.9)
P 		64.3
(-3)
P 		71
B 148.8
(3)
P 		136.4
(1.7)
P 		106.2
(-1.4)
P 		90.1
(-3)
P 		104.3
(-1.5)
P 		119.8
(0)
P 		59
C 108.5
(2.2)
P 		114.5
(3)
P 		89.7
(-0.3)
P 		69.2
(-3)
P 		69.4
(-3)
P 		108
(2.1)
P 		45
avr 110.3
(0.8) 		128.7
(3) 		89.6
(-1.8) 		79.4
(-3) 		79.8
(-3) 		97.4
(-0.8) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17530
Sequence Type Exemplar sequence
Representative Public ID C03H12.1 NCBI
Target Description C03H12.1 /REP_DB=WormBase Gene ID /WP=CE25753 /TR=O17564 /GB=CAB97241.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078182 NCBI Caenorhabditis elegans C03H12.1 (C03H12.1) mRNA, complete cds. 11/11 None
SNAP00000025413 ENSEMBL cdna:SNAP chromosome:CEL140:X:15694312:15695966:1 9/11 None
GENEFINDER00000025422 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15694312:15696201:1 10/11 None
C03H12.1 ENSEMBL cdna:known chromosome:CEL140:X:15689397:15696276:1 gene:C03H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15689432-15696209(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H12.1
Entrez Gene 181659 Entrez gene
SwissProt O17564 EMBL-EBI
WormBase CE35380 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03827 Hypothetical protein C03H12.1 [Caenorhabditis elegans] emb|CAB97241.2| Hypothetical protein C03H12.1 [Caenorhabditis elegans] ref|NP_510583.2| C03H12.1 [Caenorhabditis elegans] 0.0
blast CAE63353 Hypothetical protein CBG07757 [Caenorhabditis briggsae] 0.0
blast CAB03827 Hypothetical protein C03H12.1 [Caenorhabditis elegans] emb|CAB97241.2| Hypothetical protein C03H12.1 [Caenorhabditis elegans] ref|NP_510583.2| C03H12.1 [Caenorhabditis elegans] 1.0E-109
blast CAE63353 Hypothetical protein CBG07757 [Caenorhabditis briggsae] 3.0E-86
blast CAB03827 Hypothetical protein C03H12.1 [Caenorhabditis elegans] emb|CAB97241.2| Hypothetical protein C03H12.1 [Caenorhabditis elegans] ref|NP_510583.2| C03H12.1 [Caenorhabditis elegans] 2.0E-85
blast CAE63353 Hypothetical protein CBG07757 [Caenorhabditis briggsae] 8.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510583.2 1 83-105
C03H12.1 1 83-105
Sequence
Target Sequence 
>C. ELEGANS:180577_AT
gtagattctacagccgagcttcttttgagtagaaaaattaacgttattctatttatggga
ggaatttggcatagcgcatcaagttctgcaatcgctccatttcatctcgttgccaatcac
ttcaaggagtctaagaatttaatcgatttttcaatagtcgacgtttctgagaccaaactt
ccttacaatctcaattttgatcaacttccaaagattctaatcaccagcgctgacagaagt
aatacttatatgttcctaataaaagtagttttgttccaaaacagctccgaagcgtcaaat
gcaaaaacttttgtgcttttaagcattgggttgagctggacctaccccgaagagtttatg
atcaatcacaccaacattgcgcgatttgttctaacaaggcccggaaaaatattcggacgg
ttgcgctggatggattcatgtcagggtacatgccgaaaacgagcacaacgggaaatgcga
gacgatcgattgcagctcaaacggcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGATTCTACAGCCGAGCTTCTTT 426 455 1570 Antisense
CATCAAGTTCTGCAATCGCTCCATT 3 215 1646 Antisense
ATCTCGTTGCCAATCACTTCAAGGA 331 33 1673 Antisense
TTCTGAGACCAAACTTCCTTACAAT 353 691 1734 Antisense
GATTCTAATCACCAGCGCTGACAGA 487 431 1782 Antisense
GTTCCAAAACAGCTCCGAAGCGTCA 245 439 1842 Antisense
AGCATTGGGTTGAGCTGGACCTACC 53 79 1891 Antisense
GGACCTACCCCGAAGAGTTTATGAT 571 521 1907 Antisense
ATCACACCAACATTGCGCGATTTGT 546 27 1934 Antisense
TATTCGGACGGTTGCGCTGGATGGA 103 663 1979 Antisense
GATCGATTGCAGCTCAAACGGCGTT 563 417 2053 Antisense
Sequence Source Affymetrix Proprietary Database