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[180575_at]

Description C13A2.4 /REP_DB=WormBase Gene ID /WP=CE08116 /TR=O16874 /GB=AAB69876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 26      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 7
(-3)
A 		8.3
(-2.1)
A 		15.8
(3)
A 		14
(1.8)
A 		9
B 5
(-2.7)
A 		23.9
(3)
A 		4.1
(-3)
A 		4
(-3)
A 		20
C 3.8
(-3)
A 		32.6
(-0.2)
A 		6
(-2.8)
A 		64.6
(3)
A 		61
avr 5.3
(-3) 		21.6
(1.4) 		8.6
(-2.1) 		27.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1983
1 2 3 4 5 6 range
A 22.8
(-2.9)
A 		4.8
(-3)
A 		133.5
(-2.6)
P 		1985.5
(3)
P 		1164.4
(0.5)
P 		167.4
(-2.5)
P 		1981
B 7.7
(-3)
A 		3
(-3)
A 		140.8
(-2.4)
A 		1504.1
(3)
P 		1202.6
(1.8)
P 		163.8
(-2.4)
P 		1501
C 11.6
(-3)
A 		22.2
(-3)
A 		78.1
(-2.7)
P 		1442.7
(3)
P 		1073.1
(1.5)
P 		182.3
(-2.3)
P 		1431
avr 14
(-3) 		10
(-3) 		117.5
(-2.6) 		1644.1
(3) 		1146.7
(1.2) 		171.2
(-2.4) 		1634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.5
(-1.2)
A 		1.8
(-3)
A 		4.1
(3)
A 		2
(-2.5)
A 		2
B 1.6
(-2.2)
A 		5.9
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5
C 1.3
(-3)
A 		9.4
(2.1)
A 		2.1
(-2.5)
A 		10.9
(3)
A 		10
avr 1.8
(-3) 		5.7
(3) 		2.4
(-2.1) 		4.6
(1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 4.2
(-3)
A 		1.7
(-3)
A 		29.1
(-2.7)
P 		503.6
(3)
P 		351.4
(1.2)
P 		40.8
(-2.5)
P 		502
B 2.7
(-3)
A 		1
(-3)
A 		34.2
(-2.6)
A 		398.4
(1.9)
P 		488.6
(3)
P 		61.1
(-2.3)
P 		488
C 4.3
(-3)
A 		6.8
(-3)
A 		19.9
(-2.7)
P 		290.1
(2)
P 		347.2
(3)
P 		61
(-2)
P 		343
avr 3.7
(-3) 		3.2
(-3) 		27.7
(-2.6) 		397.4
(3) 		395.7
(3) 		54.3
(-2.2) 		394
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11744
Sequence Type Exemplar sequence
Representative Public ID C13A2.4 NCBI
Target Description C13A2.4 /REP_DB=WormBase Gene ID /WP=CE08116 /TR=O16874 /GB=AAB69876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072449 NCBI Caenorhabditis elegans C13A2.4 (C13A2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000044278 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7279140:7285954:1 11/11 None
C13A2.4 ENSEMBL cdna:known chromosome:CEL140:V:7281991:7283110:1 gene:C13A2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044272 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7281991-7283111(+) 97.76 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.4
Entrez Gene 182552 Entrez gene
SwissProt O16874 EMBL-EBI
WormBase CE08116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69877 Hypothetical protein C13A2.5 [Caenorhabditis elegans] ref|NP_504849.1| C13A2.5 [Caenorhabditis elegans] 1.0E-177
blast AAB69876 Hypothetical protein C13A2.4 [Caenorhabditis elegans] ref|NP_504850.1| C13A2.4 [Caenorhabditis elegans] 1.0E-164
blast AAB69876 Hypothetical protein C13A2.4 [Caenorhabditis elegans] ref|NP_504850.1| C13A2.4 [Caenorhabditis elegans] 1.0E-137
blast T19496 hypothetical protein C27A7.2 - Caenorhabditis elegans 1.0E-117
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-104
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 3.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.0E-59
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.0E-59
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.5E-115
Sequence
Target Sequence 
>C. ELEGANS:180575_AT
gagatcaaatatgtggcgtttccaaagaataatgatgaacaacttaccatggtgacactt
ggaataggacatgatatacaagcagaacttcatttgaaagcgatgtaccccaaagttcaa
tttcacggcgcggatccaggtgttgttgtgaacaaagacttatacgagaataagttgggc
ggaagttactaccactatgcagtgagtggggaaaccggaatgcaaaaatccaaagtttat
acagtaagaggcttcacacttgacgcaacgaaacacattcaggctgactattttttcaag
aatgtacttaataaaaataggattgacattctttggatggacatcgaacaaaatgaatac
ggaattcttgagcaaatacatcagaatggaaagttggatcaggtcgacgttaagatatgt
cagataaacgttgaattccataaagatgtttttggagaatcagaagtcgaaatgcgacaa
ttccgtgacttcgtgtacaaggtgttggacgacaagaaatatatcatccttaaaccatcg
ttcgcaaagtataaaactattggcttcgtgagagctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCAAATATGTGGCGTTTCCAA 418 397 235 Antisense
GAACAACTTACCATGGTGACACTTG 138 353 271 Antisense
AAAGCGATGTACCCCAAAGTTCAAT 545 123 331 Antisense
CCCAAAGTTCAATTTCACGGCGCGG 707 257 343 Antisense
GCGCGGATCCAGGTGTTGTTGTGAA 649 287 362 Antisense
GGGCGGAAGTTACTACCACTATGCA 493 485 411 Antisense
GGCTTCACACTTGACGCAACGAAAC 489 535 484 Antisense
GCAACGAAACACATTCAGGCTGACT 656 317 499 Antisense
ATGCGACAATTCCGTGACTTCGTGT 539 41 706 Antisense
TATATCATCCTTAAACCATCGTTCG 348 661 754 Antisense
AACTATTGGCTTCGTGAGAGCTTTT 424 139 789 Antisense
Sequence Source Affymetrix Proprietary Database