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[180574_at]

Description C04C11.3 /REP_DB=WormBase Gene ID /WP=CE23517 /TR=Q9U3S1 /GB=CAB54189.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 47      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 119.3
(3)
A 		72.4
(-0.5)
A 		38.1
(-3)
A 		94.7
(1.2)
A 		81
B 85.7
(3)
A 		41.2
(-3)
A 		85
(2.9)
A 		43.4
(-2.7)
A 		45
C 116.9
(3)
A 		74.4
(-0.8)
A 		49.9
(-3)
A 		56.4
(-2.4)
A 		67
avr 107.3
(3) 		62.7
(-2.4) 		57.7
(-3) 		64.8
(-2.1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 15.6
(-2.4)
A 		103.6
(3)
A 		41.4
(-0.8)
A 		11.5
(-2.7)
A 		14.6
(-2.5)
A 		5.8
(-3)
A 		98
B 67.8
(3)
A 		23.9
(-1.9)
A 		43.9
(0.3)
A 		24
(-1.9)
A 		14.4
(-3)
A 		25.9
(-1.7)
A 		53
C 77.7
(3)
A 		39.9
(-1.2)
A 		29.6
(-2.3)
A 		34.6
(-1.8)
A 		23.5
(-3)
A 		34.9
(-1.7)
A 		54
avr 53.7
(2.7) 		55.8
(3) 		38.3
(0.3) 		23.4
(-2.1) 		17.5
(-3) 		22.2
(-2.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 43.4
(3)
A 		15.7
(-2)
A 		10
(-3)
A 		13.9
(-2.3)
A 		33
B 27.3
(3)
A 		10.2
(-2.7)
A 		19.7
(0.5)
A 		9.2
(-3)
A 		18
C 38.7
(3)
A 		21.4
(-0.6)
A 		17.4
(-1.4)
A 		9.5
(-3)
A 		29
avr 36.5
(3) 		15.8
(-1.9) 		15.7
(-1.9) 		10.9
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		36.9
(3)
A 		9
(-1.7)
A 		2.9
(-2.7)
A 		4.4
(-2.5)
A 		1.4
(-3)
A 		36
B 23.6
(3)
A 		7.9
(-2.3)
A 		10.6
(-1.4)
A 		6.3
(-2.8)
A 		5.8
(-3)
A 		9.7
(-1.7)
A 		18
C 28.8
(3)
A 		12.2
(-1.6)
A 		7.5
(-2.9)
A 		7
(-3)
A 		7.6
(-2.8)
A 		11.7
(-1.7)
A 		22
avr 18.4
(2.7) 		19
(3) 		9
(-1.4) 		5.4
(-3) 		5.9
(-2.8) 		7.6
(-2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18008
Sequence Type Exemplar sequence
Representative Public ID C04C11.3 NCBI
Target Description C04C11.3 /REP_DB=WormBase Gene ID /WP=CE23517 /TR=Q9U3S1 /GB=CAB54189.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029268(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029268 NCBI Caenorhabditis elegans DYstrophin-like phenotype and CAPON related family member (dyc-1) (dyc-1) mRNA, complete cds. 10/11 None
SNAP00000006299 ENSEMBL cdna:SNAP chromosome:CEL140:X:14050748:14051156:1 10/11 None
GENEFINDER00000006308 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14050748:14051156:1 10/11 None
C33G3.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:14049455:14063775:1 gene:C33G3.1 10/11 A 
C33G3.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:14049556:14063795:1 gene:C33G3.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181515 2 1 NM_001029268 175221_at (11), 180574_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14050747-14051204(+) 100.0 100.0
Public Domain and Genome References
Ensembl C33G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30431 Hypothetical protein C33G3.1b [Caenorhabditis elegans] emb|CAD30430.1| Hypothetical protein C33G3.1b [Caenorhabditis elegans] ref|NP_001024439.1| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 (Dyb-1 binding and CAPON-related protein) 0.0
blast CAB01738 Hypothetical protein C33G3.1a [Caenorhabditis elegans] ref|NP_741925.2| DYstrophin-like phenotype and CAPON related family member (dyc-1) [Caenorhabditis elegans] emb|CAB44432.1| DYC-1 protein [Caenorhabditis elegans] 0.0
blast CAE63044 Hypothetical protein CBG07311 [Caenorhabditis briggsae] 0.0
blast T18910 hypothetical protein C04C11.3 - Caenorhabditis elegans 4.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 6.3E-39
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 8.7E-5
Sequence
Target Sequence 
>C. ELEGANS:180574_AT
tgcctgtgcggaaaaagcatggtccgtacgatatcatcgccgacgatgtctacgactgcc
gtattccactccataacgaactcgcttatcagcatggtattcatttcgaagcaaagtatg
tcggaagcatggaaattcctagacccgggacgagaatcgagattgtggcggcgatgcgac
gagttcgagtgagttttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTGTGCGGAAAAAGCATGGTCC 432 585 14 Antisense
AGCATGGTCCGTACGATATCATCGC 147 79 29 Antisense
GATATCATCGCCGACGATGTCTACG 119 427 43 Antisense
GACGATGTCTACGACTGCCGTATTC 137 377 55 Antisense
GTATTCCACTCCATAACGAACTCGC 692 451 74 Antisense
AACGAACTCGCTTATCAGCATGGTA 151 145 88 Antisense
TCAGCATGGTATTCATTTCGAAGCA 513 623 102 Antisense
GCATGGAAATTCCTAGACCCGGGAC 535 309 140 Antisense
CCTAGACCCGGGACGAGAATCGAGA 130 265 151 Antisense
AGATTGTGGCGGCGATGCGACGAGT 340 65 173 Antisense
GCGACGAGTTCGAGTGAGTTTTTTT 374 225 189 Antisense
Sequence Source Affymetrix Proprietary Database