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[180573_at]

Description K05G3.2 /REP_DB=WormBase Gene ID /WP=CE04754 /TR=Q21249 /GB=AAB52497.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.1
(-3)
A 		5.7
(-2.5)
A 		25
(3)
A 		13.2
(-0.4)
A 		21
B 2.9
(-2.2)
A 		6.4
(2.6)
A 		2.3
(-3)
A 		6.7
(3)
A 		4
C 2.5
(-3)
A 		6
(-1.7)
A 		18.8
(3)
A 		10.7
(0)
A 		16
avr 3.2
(-3) 		6
(-1.6) 		15.4
(3) 		10.2
(0.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4
(0.5)
A 		5.6
(3)
A 		3.5
(-0.2)
A 		3.2
(-0.7)
A 		3.1
(-0.8)
A 		1.7
(-3)
A 		4
B 4.1
(-0.9)
A 		5.1
(1.7)
A 		5.6
(3)
A 		3.3
(-3)
A 		3.3
(-3)
A 		4.1
(-0.9)
A 		2
C 6.2
(2)
A 		6.7
(3)
A 		5
(-0.3)
A 		5.4
(0.5)
A 		3.6
(-3)
A 		5.2
(0.1)
A 		3
avr 4.8
(0.6) 		5.8
(3) 		4.7
(0.4) 		4
(-1.3) 		3.3
(-3) 		3.7
(-2) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(-2.7)
A 		1.2
(-3)
A 		6.5
(3)
A 		1.9
(-2.2)
A 		5
B 0.9
(-0.8)
A 		1.6
(3)
A 		0.5
(-3)
A 		1.4
(1.9)
A 		1
C 0.8
(-3)
A 		1.7
(-2.1)
A 		6.6
(3)
A 		1.8
(-2)
A 		6
avr 1.1
(-3) 		1.5
(-2.3) 		4.5
(3) 		1.7
(-1.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-1.9)
A 		2
(3)
A 		0.8
(-1.5)
A 		0.8
(-1.5)
A 		0.9
(-1.1)
A 		0.4
(-3)
A 		2
B 1.4
(0.8)
A 		1.7
(3)
A 		1.4
(0.8)
A 		0.9
(-3)
A 		1.3
(0)
A 		1.5
(1.5)
A 		1
C 2.3
(3)
A 		2.1
(2)
A 		1.3
(-2)
A 		1.1
(-3)
A 		1.2
(-2.5)
A 		1.7
(0)
A 		1
avr 1.5
(0.6) 		1.9
(3) 		1.2
(-1.2) 		0.9
(-3) 		1.1
(-1.8) 		1.2
(-1.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17939
Sequence Type Exemplar sequence
Representative Public ID K05G3.2 NCBI
Target Description K05G3.2 /REP_DB=WormBase Gene ID /WP=CE04754 /TR=Q21249 /GB=AAB52497.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078274(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078274 NCBI Caenorhabditis elegans K05G3.2 (K05G3.2) mRNA, complete cds. 9/11 None
K05G3.2 ENSEMBL cdna:known chromosome:CEL140:X:16494843:16499788:1 gene:K05G3.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038240 6/11 Cross Hyb Matching Probes None
SNAP00000038237 4/11 Cross Hyb Matching Probes None
GENEFINDER00000038239 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16494818-16499788(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05G3.2
Entrez Gene 187041 Entrez gene
SwissProt Q21249 EMBL-EBI
WormBase CE35739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52497 Hypothetical protein K05G3.2 [Caenorhabditis elegans] ref|NP_510675.2| K05G3.2 [Caenorhabditis elegans] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:180573_AT
ggagacgatatgcaaccttcttggcacattgggaatagacaggcacaagaaaacattcca
gatcaaagacgggattctcgtatggggagcaatgtgaacaatgatggtatgagaaatacg
gatcaaagtttgcgtaggcaagaaatgcgaaaccttttttactgtgtgaatacaaatcta
ataataatttttactcttagatcatgcacacctccgatgcgttacgaaaatagacatgga
agtcgtaagtcgcgaaatttcaaaaatttcaaaaaaaaagaagattttgtagaacatttc
catgaaagacagcagcaaatgagttctaacaatgtcggaaacgaacaacgttctgaaggt
agaggaacagttgggcaatattgcaatggacaagttatgacaagacctccaatgtccaat
ggaagcaaaaagaaggcaaaagcatcgagacgtgacgattcgagcgatgatgatctttat
gctgatgatccgaatgatccggattacgatccccacttgcatatgatcgtagtgtcaact
aagaaagagcccgtaatgccagaacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACGATATGCAACCTTCTTGGC 549 519 436 Antisense
GCAACCTTCTTGGCACATTGGGAAT 370 319 447 Antisense
GACGGGATTCTCGTATGGGGAGCAA 172 377 503 Antisense
AATGCGAAACCTTTTTTACTGTGTG 438 165 579 Antisense
TTACTCTTAGATCATGCACACCTCC 324 683 626 Antisense
CACACCTCCGATGCGTTACGAAAAT 543 193 642 Antisense
GACAAGACCTCCAATGTCCAATGGA 135 365 834 Antisense
GAAGGCAAAAGCATCGAGACGTGAC 471 333 867 Antisense
GAGACGTGACGATTCGAGCGATGAT 658 393 882 Antisense
AATGATCCGGATTACGATCCCCACT 117 165 928 Antisense
AGAGCCCGTAATGCCAGAACAACAA 293 69 981 Antisense
Sequence Source Affymetrix Proprietary Database