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[180572_at]

Description F36D3.10 /REP_DB=WormBase Gene ID /WP=CE15974 /TR=O45467 /GB=CAB04323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 5.3
(-3)
A 		13.5
(-2.4)
A 		57.2
(1)
A 		83.2
(3)
A 		78
B 21.5
(-0.6)
A 		42.2
(3)
A 		42.2
(3)
A 		7.4
(-3)
A 		35
C 6.4
(-1.9)
A 		18.2
(3)
A 		3.7
(-3)
A 		10.6
(-0.1)
A 		15
avr 11.1
(-3) 		24.6
(0.5) 		34.4
(3) 		33.7
(2.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 14.6
(-0.8)
A 		20.6
(0.3)
A 		5.9
(-2.5)
A 		3.4
(-3)
A 		34.6
(3)
A 		3.7
(-2.9)
A 		31
B 7.8
(-2.2)
A 		8.4
(-2)
A 		5.7
(-3)
A 		7
(-2.5)
A 		22.1
(3)
A 		20.4
(2.4)
A 		16
C 5.6
(-3)
A 		21.6
(0.5)
A 		5.4
(-3)
A 		6
(-2.9)
A 		15.1
(-0.9)
A 		32.9
(3)
A 		28
avr 9.3
(-1.8) 		16.9
(0.7) 		5.7
(-2.9) 		5.5
(-3) 		23.9
(3) 		19
(1.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.9
(-3)
A 		2.9
(-2.5)
A 		15
(3)
A 		12.2
(1.7)
A 		13
B 6.9
(0.6)
A 		10.4
(3)
A 		9.8
(2.6)
A 		1.6
(-3)
A 		9
C 2.1
(-1.8)
A 		5.2
(3)
A 		1.3
(-3)
A 		1.8
(-2.2)
A 		4
avr 3.6
(-3) 		6.2
(0.1) 		8.7
(3) 		5.2
(-1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.7
(-1.9)
A 		7.3
(1)
A 		1.3
(-2.7)
A 		0.9
(-3)
A 		10.4
(3)
A 		0.9
(-3)
A 		10
B 2.7
(-2)
A 		2.8
(-1.9)
A 		1.4
(-3)
A 		1.9
(-2.6)
A 		9
(3)
A 		7.6
(1.9)
A 		8
C 2.1
(-2.4)
A 		6.6
(0.3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		4.9
(-0.7)
A 		11
(3)
A 		10
avr 2.5
(-1.9) 		5.6
(0.8) 		1.4
(-2.9) 		1.3
(-3) 		8.1
(3) 		6.5
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14194
Sequence Type Exemplar sequence
Representative Public ID F36D3.10 NCBI
Target Description F36D3.10 /REP_DB=WormBase Gene ID /WP=CE15974 /TR=O45467 /GB=CAB04323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074784 NCBI Caenorhabditis elegans F36D3.10 (F36D3.10) mRNA, complete cds. 11/11 None
F36D3.10 ENSEMBL cdna:known chromosome:CEL140:V:16533913:16534486:1 gene:F36D3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025154 6/11 Cross Hyb Matching Probes None
GENEFINDER00000025160 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16533912-16534486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D3.10
Entrez Gene 185356 Entrez gene
SwissProt O45467 EMBL-EBI
WormBase CE15974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04323 Hypothetical protein F36D3.10 [Caenorhabditis elegans] ref|NP_507185.1| F36D3.10 [Caenorhabditis elegans] 3.0E-78
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 3.0E-45
blast AAG24216 Hypothetical protein W10G11.7 [Caenorhabditis elegans] ref|NP_494584.1| W10G11.7 [Caenorhabditis elegans] 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:180572_AT
gagtatactctcaaacgacaccatcgataaataatagttgtgaggctggttggagatttt
caaatcgtccttcagggggatggtgcatcagagtgttcccaggaatccatgccgcaaaga
tggatgctgagagagcttgtgtggctgttggtggaactcttacaggacttcagaacaatg
cagacgcgttgttcattcaaagaatgtttagatttaacagcgcttccgtttgggttggtc
ttcaacgtatcgcggcttgtaggaaccggaatttatcggtcgcatgtagcagaactaccg
ctttcgaatggaccgatggctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATACTCTCAAACGACACCATC 414 399 59 Antisense
AAATCGTCCTTCAGGGGGATGGTGC 380 91 120 Antisense
GTGCATCAGAGTGTTCCCAGGAATC 534 479 141 Antisense
TCCCAGGAATCCATGCCGCAAAGAT 412 597 155 Antisense
GCTTGTGTGGCTGTTGGTGGAACTC 376 305 193 Antisense
TAGATTTAACAGCGCTTCCGTTTGG 415 651 267 Antisense
TGGGTTGGTCTTCAACGTATCGCGG 351 515 289 Antisense
GTATCGCGGCTTGTAGGAACCGGAA 81 441 305 Antisense
GGAATTTATCGGTCGCATGTAGCAG 317 533 326 Antisense
GTAGCAGAACTACCGCTTTCGAATG 534 455 344 Antisense
GCTTTCGAATGGACCGATGGCTCGG 562 303 358 Antisense
Sequence Source Affymetrix Proprietary Database