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[180571_at] 7TM chemoreceptor, srw family

Description K12D9.3 /REP_DB=WormBase Gene ID /WP=CE12184 /TR=P91378 /GB=AAG24161.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 10      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 43.6
(-3)
A 		86.2
(-1.6)
P 		50.9
(-2.8)
A 		230.1
(3)
P 		187
B 25.4
(-2.8)
A 		60.2
(-1.8)
A 		19.1
(-3)
A 		216.7
(3)
P 		198
C 41.2
(-2.6)
A 		55.5
(-2)
A 		30.4
(-3)
A 		174.6
(3)
P 		144
avr 36.7
(-2.9) 		67.3
(-1.8) 		33.5
(-3) 		207.1
(3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 86.2
(3)
A 		41.1
(-2.4)
A 		41.9
(-2.3)
P 		45.4
(-1.9)
A 		36.5
(-3)
A 		74.6
(1.6)
A 		50
B 24.7
(-0.3)
A 		41.3
(2)
P 		27.9
(0.1)
A 		4.8
(-3)
A 		48
(2.9)
A 		48.8
(3)
P 		44
C 32.2
(-3)
A 		73.4
(3)
P 		34.9
(-2.6)
A 		44.6
(-1.2)
A 		38.6
(-2.1)
A 		38.1
(-2.1)
A 		41
avr 47.7
(1.4) 		51.9
(2.5) 		34.9
(-2.1) 		31.6
(-3) 		41
(-0.5) 		53.8
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 15.9
(-2.2)
A 		18.7
(-1.4)
P 		13.3
(-3)
A 		33.7
(3)
P 		20
B 8.1
(-2.5)
A 		14.9
(-1.5)
A 		4.4
(-3)
A 		46.2
(3)
P 		42
C 13.7
(-2)
A 		16
(-1.3)
A 		10.6
(-3)
A 		29.4
(3)
P 		19
avr 12.6
(-2.3) 		16.5
(-1.4) 		9.4
(-3) 		36.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.9
(1.5)
A 		14.6
(0.6)
A 		9.1
(-3)
P 		11.5
(-1.4)
A 		11
(-1.7)
A 		18.2
(3)
A 		9
B 8.6
(-0.6)
A 		13.7
(1.1)
P 		6.8
(-1.2)
A 		1.3
(-3)
A 		19.5
(3)
A 		18.2
(2.6)
P 		18
C 11.9
(-1.7)
A 		22.4
(3)
P 		8.9
(-3)
A 		9
(-3)
A 		12.5
(-1.4)
A 		12.8
(-1.3)
A 		14
avr 12.1
(0) 		16.9
(3) 		8.3
(-2.4) 		7.3
(-3) 		14.3
(1.4) 		16.4
(2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15415
Sequence Type Exemplar sequence
Representative Public ID K12D9.3 NCBI
Target Description K12D9.3 /REP_DB=WormBase Gene ID /WP=CE12184 /TR=P91378 /GB=AAG24161.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071413(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071413 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-121) (srw-121) mRNA, complete cds. 10/11 None
K12D9.3 ENSEMBL cdna:known chromosome:CEL140:V:2990140:2991412:-1 gene:K12D9.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022487 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2990089-2991169(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-121
Ensembl K12D9.3
Entrez Gene 187324 Entrez gene
SwissProt P91378 EMBL-EBI
WormBase CE34343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24161 Serpentine receptor, class w protein 121 [Caenorhabditis elegans] ref|NP_503814.2| Serpentine Receptor, class W family member (srw-121) [Caenorhabditis elegans] 0.0
blast AAG24156 Serpentine receptor, class w protein 122 [Caenorhabditis elegans] ref|NP_503802.2| Serpentine Receptor, class W family member (srw-122) [Caenorhabditis elegans] 1.0E-133
blast AAQ01536 Serpentine receptor, class w protein 123 [Caenorhabditis elegans] ref|NP_001023706.1| Serpentine Receptor, class W family member (srw-123) [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503814.2 7 38-60,73-92,130-149,162-181,226-248,273-295,310-332
K12D9.3 7 38-60,73-92,130-149,162-181,226-248,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:180571_AT
aaaggcagccgctattgtcattgctatagtttgcatctcaagtttgcctgtttcaatgtt
cagatttcttgaaaacacactgatggagagcattccccgtcagtcgtgtgctccaaatag
aacttattatgaatatgtggggtcagaactttttatggataacgaaggatctatcgcgaa
atattttaacttgcttaactcactagtgtcggatataattccgtgcatatcgcttccaat
tgtgacctgtctacttgtttatgctgtattgaaatctaacaaaaaacgtgcaaaactgat
ctcttcttacacagataagagttctcgtggaaaaactggattgcaacattctaaatcagt
tggcatccattttttcaatgttaataaccttgaacagttgcactcatctcattatttgcc
taatcatgtcttctcaatatcggagtacaaccattcaaatcttcacctgtggatatttca
accaagtaactatagtgctactggaaatgaattgaactttttttcagaaaaaaagaattt
cgagtcgaagtcaagtgccatagcttttcctgtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCAGCCGCTATTGTCATTGCT 329 121 294 Antisense
TTGCATCTCAAGTTTGCCTGTTTCA 690 703 324 Antisense
CACTGATGGAGAGCATTCCCCGTCA 506 197 371 Antisense
AACTTGCTTAACTCACTAGTGTCGG 575 137 481 Antisense
GTGCATATCGCTTCCAATTGTGACC 169 481 516 Antisense
GTGACCTGTCTACTTGTTTATGCTG 652 481 535 Antisense
TGCAAAACTGATCTCTTCTTACACA 273 577 582 Antisense
GTTGCACTCATCTCATTATTTGCCT 316 439 690 Antisense
ATTTGCCTAATCATGTCTTCTCAAT 611 17 707 Antisense
GTACAACCATTCAAATCTTCACCTG 550 461 738 Antisense
AAGTGCCATAGCTTTTCCTGTGGTT 668 157 846 Antisense
Sequence Source Affymetrix Proprietary Database