[Home] | [Total List]

[180570_at]

Description F36H9.4 /REP_DB=WormBase Gene ID /WP=CE09970 /TR=O16620 /GB=AAB66095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 86.8
(2.8)
P 		4
(-3)
A 		33
(-1)
A 		90
(3)
A 		86
B 58.6
(3)
A 		22.4
(-2.6)
A 		19.8
(-3)
A 		27.3
(-1.8)
A 		39
C 33.6
(-1.4)
A 		32.3
(-1.7)
A 		25.6
(-3)
A 		55.4
(3)
A 		30
avr 59.7
(3) 		19.6
(-3) 		26.1
(-2) 		57.6
(2.7) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 72.1
(1.1)
A 		76.2
(1.5)
P 		34
(-3)
A 		89.7
(3)
P 		79.8
(1.9)
P 		63.3
(0.2)
M 		56
B 67.7
(0.1)
A 		102.6
(3)
P 		46.7
(-1.6)
A 		103
(3)
P 		30.3
(-3)
A 		43.4
(-1.9)
A 		73
C 60.8
(0.2)
A 		66.1
(0.7)
A 		92
(3)
P 		89
(2.7)
P 		50.4
(-0.7)
A 		24.5
(-3)
A 		68
avr 66.9
(-0.2) 		81.6
(1.5) 		57.6
(-1.3) 		93.9
(3) 		53.5
(-1.8) 		43.7
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 31.6
(3)
P 		0.9
(-3)
A 		8.6
(-1.5)
A 		13.2
(-0.6)
A 		31
B 18.7
(3)
A 		5.5
(-2.6)
A 		4.6
(-3)
A 		5.8
(-2.5)
A 		14
C 11.1
(3)
A 		9.3
(-1.9)
A 		8.9
(-3)
A 		9.3
(-1.9)
A 		2
avr 20.5
(3) 		5.2
(-3) 		7.4
(-2.1) 		9.4
(-1.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.3
(-1.2)
A 		27.1
(3)
P 		7.4
(-3)
A 		22.7
(1.7)
P 		24.1
(2.1)
P 		15.4
(-0.6)
M 		20
B 23.6
(0.2)
A 		34.2
(3)
P 		11.3
(-3)
A 		27.3
(1.2)
P 		12.3
(-2.7)
A 		16.2
(-1.7)
A 		23
C 22.5
(2.6)
A 		20.2
(1.7)
A 		23.4
(3)
P 		17.9
(0.8)
P 		16.3
(0.2)
A 		8.2
(-3)
A 		15
avr 19.8
(-0.2) 		27.2
(3) 		14
(-2.7) 		22.6
(1) 		17.6
(-1.1) 		13.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15067
Sequence Type Exemplar sequence
Representative Public ID F36H9.4 NCBI
Target Description F36H9.4 /REP_DB=WormBase Gene ID /WP=CE09970 /TR=O16620 /GB=AAB66095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182422
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002202 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1771732:1774747:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182421 7/11 Cross Hyb Matching Probes None
NM_071101 4/11 Cross Hyb Matching Probes None
SNAP00000002194 4/11 Cross Hyb Matching Probes None
F36H9.8 7/11 Cross Hyb Matching Probes None
F36H9.7 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1771731-1778960(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32003 hypothetical protein F36H9.4 - Caenorhabditis elegans 1.0E-139
blast AAO12441 Hypothetical protein F36H9.7 [Caenorhabditis elegans] ref|NP_503502.2| F36H9.7 [Caenorhabditis elegans] 1.0E-64
blast AAO12442 Hypothetical protein F36H9.8 [Caenorhabditis elegans] ref|NP_872221.1| F36H9.8 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002202 2 5-27,111-133
Sequence
Target Sequence 
>C. ELEGANS:180570_AT
atcggaatcagaggcatcgccgccaagcaatgtttgtgcaaaacggatctctgtaattcg
agccccggccagccgttccgcacctgcctcggattaggactgcttggcttcctctacgcg
ttttggagaattataataagttttttaatgcctacaaatttttatgcttactttttaatg
ccaaaatttcaagttctgccgcttaattcgcaatattcctttaaatacactttgcgcgta
aaaccagatgcccggtccgcatttcgaaacttaccgcggtgtttgcggactcgcgaaaaa
cagattttattttctgtgcgcaatttttccatttttctcctatttttctttaaaaacgat
catagatttgattttaatttttccatctgcaacaaaaaaaaagaactcgaaaatctcctt
gcagctctttttagatcgttcctctctttgttctgcatctctgcgtcgagtgatctctgc
aaaagttgtcccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAATCAGAGGCATCGCCGCCA 383 33 916 Antisense
ATCGCCGCCAAGCAATGTTTGTGCA 342 37 931 Antisense
AACGGATCTCTGTAATTCGAGCCCC 628 143 957 Antisense
ACCTGCCTCGGATTAGGACTGCTTG 651 83 997 Antisense
TTTCAAGTTCTGCCGCTTAATTCGC 28 669 1102 Antisense
ACTTTGCGCGTAAAACCAGATGCCC 46 101 1144 Antisense
TTCGAAACTTACCGCGGTGTTTGCG 601 687 1178 Antisense
GAACTCGAAAATCTCCTTGCAGCTC 539 347 1318 Antisense
TGCAGCTCTTTTTAGATCGTTCCTC 162 579 1335 Antisense
TCTCTGCGTCGAGTGATCTCTGCAA 59 613 1373 Antisense
TGATCTCTGCAAAAGTTGTCCCGCC 629 565 1386 Antisense
Sequence Source Affymetrix Proprietary Database