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[180569_at]

Description B0507.8 /REP_DB=WormBase Gene ID /WP=CE07767 /TR=Q22882 /GB=AAB04818.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 86      4grp_total > 13      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 125.8
(0.7)
A 		91.6
(-1)
A 		49.1
(-3)
A 		174.6
(3)
A 		126
B 159.1
(1.4)
A 		42.8
(-3)
A 		63.3
(-2.2)
A 		200
(3)
P 		157
C 135.7
(0)
A 		65
(-2.3)
A 		42.5
(-3)
A 		228
(3)
P 		186
avr 140.2
(0.6) 		66.5
(-2.4) 		51.6
(-3) 		200.9
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1574
1 2 3 4 5 6 range
A 424.7
(-3)
M 		434.7
(-3)
P 		646.3
(-1.9)
P 		1322.7
(1.3)
P 		1115.5
(0.3)
P 		1667.9
(3)
P 		1243
B 265.1
(-3)
P 		404.8
(-2.4)
P 		698.3
(-1.2)
P 		907.7
(-0.3)
P 		1109.5
(0.5)
P 		1714.5
(3)
P 		1449
C 350.5
(-3)
P 		443.9
(-2.6)
P 		828.6
(-1.1)
P 		1113.6
(0.1)
P 		761.7
(-1.3)
P 		1839.5
(3)
P 		1489
avr 346.8
(-3) 		427.8
(-2.7) 		724.4
(-1.4) 		1114.7
(0.3) 		995.6
(-0.2) 		1740.6
(3) 		1394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 45.8
(3)
A 		19.9
(-1.7)
A 		12.8
(-3)
A 		25.6
(-0.7)
A 		33
B 50.7
(3)
A 		10.6
(-3)
A 		14.7
(-2.4)
A 		42.6
(1.8)
P 		40
C 44.9
(3)
A 		18.7
(-2.2)
A 		14.8
(-3)
A 		38.4
(1.7)
P 		30
avr 47.1
(3) 		16.4
(-2.6) 		14.1
(-3) 		35.5
(0.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 78.3
(-3)
M 		154.6
(-1.6)
P 		140.8
(-1.9)
P 		335.5
(1.7)
P 		336.6
(1.7)
P 		406.1
(3)
P 		328
B 92.2
(-3)
P 		134.7
(-2.5)
P 		169.6
(-2.2)
P 		240.4
(-1.4)
P 		450.8
(0.9)
P 		639.3
(3)
P 		547
C 129.9
(-3)
P 		135.4
(-2.9)
P 		210.9
(-2)
P 		223.9
(-1.8)
P 		246.5
(-1.6)
P 		615.8
(3)
P 		486
avr 100.1
(-3) 		141.6
(-2.5) 		173.8
(-2) 		266.6
(-0.8) 		344.6
(0.2) 		553.7
(3) 		454
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11719
Sequence Type Exemplar sequence
Representative Public ID B0507.8 NCBI
Target Description B0507.8 /REP_DB=WormBase Gene ID /WP=CE07767 /TR=Q22882 /GB=AAB04818.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072856 NCBI Caenorhabditis elegans B0507.10 (B0507.10) mRNA, complete cds. 11/11 None
SNAP00000006055 ENSEMBL cdna:SNAP chromosome:CEL140:V:8761603:8765523:-1 11/11 None
GENEFINDER00000006067 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8761603:8763078:-1 11/11 None
B0507.10 ENSEMBL cdna:known chromosome:CEL140:V:8761603:8763078:-1 gene:B0507.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8761603-8765340(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.10
Entrez Gene 260065 Entrez gene
SwissProt Q95Q93 EMBL-EBI
WormBase CE28875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95860 Hypothetical protein B0507.10 [Caenorhabditis elegans] ref|NP_505257.1| B0507.10 [Caenorhabditis elegans] 0.0
blast T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 0.0
blast AAK95861 Hypothetical protein B0507.8 [Caenorhabditis elegans] ref|NP_505258.1| B0507.8 [Caenorhabditis elegans] 1.0E-149
blast CAE71575 Hypothetical protein CBG18529 [Caenorhabditis briggsae] 1.0E-79
Sequence
Target Sequence 
>C. ELEGANS:180569_AT
gggccttctcaggaattgctaattcggcacagttgatgacaagtctagcaattgaggata
acttcgaacaatttcgtcaacattgcagaaatcttatcaaccgccacagagccttttgca
attcatacaattctattgaagcacagcttatgaatattgacaatcgtatgaaagctggaa
gaccgcttatagactttgatatggaagatcttttgagtgatctcagaatgttcagaattt
gtgcttctgaatttaatgcaggtggatctactgatgaagagagattcactgggcatattg
ctgacgtcattgcaataattggagaattgactactgaaatcaatacaattgattcaaaga
ttggcgttttcgaagaggagccacttgtcactgatcaaaatgggattttgaaagaaatga
tcgccattagtgacaaaatgaaagaaatcagtatcaaaatccagctgttcaacgtcatca
gccgtgaccacattcaagagacattggctgatcaaatgagaattgctcattctactagaa
atggacgtaacgctcttgaaggaccacccgcctatgaaaccacaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCCTTCTCAGGAATTGCTAATTC 454 491 1712 Antisense
GCTAATTCGGCACAGTTGATGACAA 68 303 1729 Antisense
TGCAGAAATCTTATCAACCGCCACA 400 577 1795 Antisense
CGCCACAGAGCCTTTTGCAATTCAT 648 257 1813 Antisense
GCTGGAAGACCGCTTATAGACTTTG 87 295 1885 Antisense
GAGAGATTCACTGGGCATATTGCTG 374 393 1990 Antisense
TGGGCATATTGCTGACGTCATTGCA 649 553 2001 Antisense
GAAGAGGAGCCACTTGTCACTGATC 142 339 2083 Antisense
TCATCAGCCGTGACCACATTCAAGA 513 619 2186 Antisense
GACGTAACGCTCTTGAAGGACCACC 195 375 2255 Antisense
CACCCGCCTATGAAACCACAAAGAA 279 201 2276 Antisense
Sequence Source Affymetrix Proprietary Database